HMM Seed Alignment: TIGR04234
Download Alignment>gi|34978622|gb|AAQ83562.1|/73-1203
IWLGLLINRKLRPEDNL----SLITDPDLIALVEYSPAWYPFALRINQALDDGLNLNGNVEECSFDSRFINN-IKFPRPE
NDFLGFKFIIEADTFVLLKDDLG--IEKPDVIRCWLIDTIPEEVEI----GGEIFKLRDEMVRRVADEAPLYAFCDIVKY
CLTEVDFNNTVIKQWLNYFVRKRDFFRFNGKDMVCSSSLIAHKRFEVALSHQRCHSKFTKLDEEGF--ECLTEGALYIMP
DPIFRSHMLRSPFGDLNQHVFARTVGPSIVWSRSDIESTN--FTLSLEPVPVDYSQDRFNYVDSENTREVVEGLRMMGMP
KNARLLHNLQTANINPTNMLKGKVNRMILAMCGYTGTHAATALVNQFKGTSDMGEAVTDTFATRVADNMFDYINIGFA--
KDGIKDISATPDILFKGGTSSASSTNTFKSISGPVKYYSPFLMDEDVDNKT--VFDTSGPKKL-VLTRISHKLRSKNANI
ITNPENFLNFN-ADALDEVVNAGSRLVRGTRAKRIITPNYGSIYANSLCTVLPAVRLLSNRPKNTLASTLEGIVGTTYTG
ALPHDVMAPFMCATTNDP-SYFAAAFDFAQFDSSQYGRISDAHADGVRRFADKFTGDDVNDAKGRLDFMSLR-SKFI-IQ
SESYRRPLKYKSKGIIAEASGVKSGELTTQLRNTATNKGHTDEVLIKFNQLSRR----KIRIKSENIIGDDKNIVFSLED
GRPLDSTTAKLLIEVARDVAQENHMELSAKRTVVGNCVTEHIKIFVARGFIMQDVFLDSFASEKNSLRAMSYADRLNTIY
DIFMTMLIRFAQAKPLMDLMVNDMCLMDGL--KSG--RVTFIPTLGTLFAIGGPEMLVGAPEIRGMAR---FMHRFDNEY
FSVMNDLYATLRDNSGGKKFIDDLTGSA-------TDDLVNDFWVKHFKRKNDYDVSLDTRITNKRQLQNLIPENCRVRL
LKMVLDTVKEPVIQIMNDTMSLVNIIQRGKLTK----YSKPKYHYVNWFIR------PYNGVKYVSPYLAADDGVRNVHT
VVGLAERNTSIPESVEPINRLLRKYPHMHPSYIGGIDILSALSE--VDSGMWRDCLLALDFREDIIQPLLVLVDNVMFRY
LHERNVTSTSLYDNTSRTYDVSDSNLNKLVHVAPSN---SNKQ--SLGWRFEGMKVVLYMARYGHMVSVS
>gi|23238152|ref|NP_694468.1|/64-1208
IFLGTLINKLFRPQIDL----SKLKDERLLRCVEYDNGWYQLCVKIQRAIDNGLEIE-KADLPKYDPKFEYN-IKHPTRE
NGFLNYYVLKECSVEIYMKDDNG--IPDPAILRGWDISTIPESIQLP---SGVVFNVRKACMRRINDEAPFYLYTSIFQY
AATRIDMDDPYTRIWLKYFIGAEDFFSYNGRVIECDKSLLAHKRFEMMIAAQRAALKY-DMVGNDIFKECMLEAFENIIR
DPIYNSYRLRGAFGDLNQHVFARTDSPALNISMVGVESTS--FRMREGTGITDS-DSRINLIDGESFEASLQTLRDYGLS
KNADLLQRAVRFPINRVNCKLGFLNRMVLGLCGYTGSHGNSAVVKQFTGTRDMGPNVTKEFYDEVVNEVFLTYKSALQ--
MGDFVEPQYRLDVLMKGGTSSASSTFNHHKIKARIRYNSPFFTDDDLDSKSDKVVKT-VDGKYRIITEVATTLKSKSATI
LTHPEDFIYAS-DDMLKCRVKMGSRLVRGTRDKRIITPNYGSTYFSMLLSSLSAVRLLSSRIPNMPALSVSGRIGTTYEG
ALPHVVMAPMMAALSGST-KYAAVALDFSQYDSSLHGDISKAHAEGLRKYASLYPKGSNYDDAEIVDLTKVSPNKFCDIT
AKNYETPLEYESVGIVAEAAGVKSGELTTQLRNTDPNKAHTTLTLKRYNSKYVR----KMDLVHENIVGDDKYVILVMTD
GKPVTKLDLKRFIDCAVDVAAENHLVISGKRSVAGNIKGEHIKIWVIKGYITQDVFLDSLVSEKISFREMKYVDKLTTIY
DIFMSMLTRFATTGPLMELFMRDIILIEGV--KMG--YLNFIPTVKLISAVGGPEMCPSAPELRGMAR---YMHDYDKDK
FDTINRLFATLRERNGTEAFRRQILRQVREDEIVKNEPLVSPLWRIHFRRRNGIIVDNDLVADTFNDIKKFMPEHVDIKL
TEDLISTLKEPVAGRMDDNVILINLFTVGKLGK----YDRPKFKY-KFFLT------EYKTTGVESPYLGACEGVRMVHK
IVGLADANVKVLNPAARLSALLRSRPGTHPAYLSGEDIFGVLSSRVNAQQTWVTVLELLDFSASVIPDVIDFCSKNMHRY
LTDKNVNLTAIFDNTSRTYDVSAEMIKQRVKISGSE---RAGMVLTRGLGLEGMKYMLYMARRGRSVKAS
>gi|8574570|gb|AAF77631.1|AF168/67-1205
VKLGTLLNWTKAERLDTIRHESRIKDERLRRLIDFDYGWIDYAVVLQRYLDEGNTIE-SANILQFDGDFVNN-IKHPTQK
NNFLDIKVIKECETYILMKDDNG--IRDPDILRAWELSSIPEVIELDVDGETKKFNLRKEMIKRIQDEAPVYFFCNPYRY
AVANLDPNIPEVRLWLEYFIGSEDFFGFNGPNVIVSKSLLAAKRFEVVVNHLRKVAAF-ELDAESK--EVMNKWIKYIMI
DPVYRSYKNRGAFGNLNQHVFARTKSEGLSWSLIDIGTTN--FELKPTKKVAGSYVNKFNLVDDVLVEESLKDLRNEGLH
KMADVTRRMIDADITPENVKKGKLNRLALSYCGYTGSHSATAMVKQFNGTKDLDPNCDPMFVDIVKDNMRVYMQEGLQKY
PQGSR-KSNRLDILFKGGTSSASSTNEHAVVNGRFRYRSELYRERDVNSST--VFKTATPGQYRVVKKISAKLKSKNANI
VTHPMNFINFK-VDDLDIVVNAGSRLVRGTRAKRIITPNYGTIYAASLMTVLPAVRLLSSRASNMGALSTQGRIGTTYHG
ALPHDVMAPQLAVTSSDDVSKICVAKDFGQFDTSQWGQISKAHADGVRSMKAHYSMG--HDTLVDLDLNDASFADLLEVT
AMSYERPLKYKMNGLVCESAGVKSGELTTQTRNTTTNISHSTVALDDYNNRAYRLNLPKLELVTDNKVGDDSVEVLRVVD
SSPLTPEIAKLYVNCMQDHADKNHLEISAKRTIVGNNVAEHIKIWVFKGYLALDVFLDSVTSEKNSFSNLNYLEQVNILY
DMAMTLMIRYCSVQACMTQFCNDMKLLNGI--RAG--NYTFIPTPKIICAYGTPEICLRAPEIRSFGR---YL-PIDEDE
YSVLNELVASLSTNKPKMDFVAQMFEQ--------NGNQVHGIWLDHFKRKNDVNP-DGGGIHISEGLKRLMPEYCERHL
NELVYKTLDDKVIRDYTSDIIITNICK-GKLSK----APKLAF-FANFYLS------LTGFNGVDSPYLTADEGVRNVHR
VIGLSYRNTLSTSPTANVDRILRNNPGSAPAYLTGNDILGVLSD--YPYQNWRTVVELLDITEPSATAIIEVATNQMHAY
LADKDLNTANLFDNTSRTYDISDRTYPKFVNITSNL---SNSN--RRGFQLEAMKHVIYMARRGIATLAN
>gi|82002200|sp|Q698V5.1|RDRP_E/73-1215
IYLGSLVTRESNEYEDV-----SYSYDNLNTIYKDAPVWEPLLNKVSKWYDEGWSVP-SSKPIPYDPNYSKCLILSPDKY
KKYHKVVVDVDYDAFHWSIDVNSEFMDMPNVIRAWDISTIPQFVDG--------FPMLKHLIDRSKKEALFYFNYRLIPY
VVHNIDKDDDMWREWLSYFLHG-DHFKPDRGSYDNFGSLLGHKRLEVALMYHNRIRLM-PMSATAL--DAMNEGAKFLMK
DPTYHTAVMKKYNGVLTQYGMAEPLGYNRGWGYTGVTTADSPFILSNVNGADGY-----TVIDREAVEEA-KEIGMQYTP
KLVKLQLANMTKTSSPVNLIDSLIGNAIISLTGFAGSEKVSTALDQFE-KENFERKVPDELFTAISNVTYEMVRESFQPL
ERSMLDKRTRLLRLYNAGTSASSSAPP----GARYIFNKKMIMYSTFLSKSIDVTDEYAPMSF----ITSLNFNNKTANI
LTHPQNYYMYDWHDNHNRIINSGSREVRGGRATRIITPDPPSNYMLLILGALNTVRDMGSHRTGFSNLGMNEVVGSSFLD
AVSHDALAPQCLATSSSR-SLCAQALDYSTWDRQQGGRIAEAKAHGIMRVANELFPNTNTNLSDVHNLLELPMSSILYLW
SESIKSSYKYKIDHSTVAVDAVRSGELTTQFSNHVTNLAALRQYHETYNRTKVPQGFRPIEVAQINIVGDDVNVILRTAD
RKPFTLRDMEGYHNHTFEKAAEYEFSISKKRSMMSNVATEHIKQYFKMGDILLDVMLSSMTSERNTFREQGYMNGINLLY
DIAVTIMARYAQNDKLFEDMMANLPFMEGVVYRHGSQKYHFHPSPCHLLGSGSPEILPSAIDLRTFARVITVLGDYESDL
YEAMSSLNATLLSTSGTTQFESQVRKHLSEE---LGDNIISPVWSEVFYR-------DEVGYEMVTKHNKLTPEGHREYL
VDRIISTLSNREKLIMNNADIIEKLLS-GKLKKVKRYFQEIKFKMSNMPITGLPDRKIEGVSELSSPYRAADVGMRRVHK
CIGLSRRNLKFPSVTERLSRLLKSYGLVTQA--DSAKILSAAAGLGRSSTRYRNLGTDLGLSDMHASSFAQRLPALLTQY
EIENASGSFTFYDTVSRTYDVSEASMNERVGDVSNNPIARANSSTSTYYRFRGMLHCLYGARFGLSLHAS