HMM Seed Alignment: TIGR03991

Download Alignment

>NTL06LB0495_L.bifle/1-338
MNL-LFDDSKRNPSLEPLSRFHSFFEWNLGGMNLLEKLDRKYPGSKFFYKGPNPDFETLIFNRYPHVFPATLEN------
---YDSIYSSNSFLP-----------------------------------------------------------------
--------------W--ELLGTVTSIIEDTLNI---DKEWKRFRQKYKSKQSGFHIVGKDKHLYIHSGATIYPGVVFDTT
HGPILIEDGVKISSFSFLEGPLFIGKNCQI-DNARITGGTLIGNQCRIGGEVENSIILDYTNKHHEGFLGHSFVSSWVNL
GALSTTSDLKNNYGIVKLKV--GDAIVNTGTIKFGSIIGPFTKLAIGVMSNTGTVFDIASNIVES-RIQGYVPAFTWI-K
PG-----ERYRLEEFLFDTKKIMARRGMNLFEFEDLYLRKLY
>NTL02LB2612_L.borgp/4-342
VQRILIDEREIPIGLRSLTRIRSFSEIRNGILSTVQRTKELYPDAKIFYVHSNPAFQQAFLERNP---------------
-----------KLFPYDEKDVDLVLSPESC--------------------------------------------------
------------LPW--NLIDGTAKNIEDDLELGKEVQKWIRKLKVKSNH---FHVIGKSKHLHVHSSAVIYPGVVFDTT
SGPVIVDKDVKITSFSFIEGPVYVGPNSQI-DNARITGATSIGATCRIGGEVGACLIGDFTNKHHEGFLGHSILGSWVNV
GALATTSDLKNNYGVVKIRE--ENDECITGSIKFGSVISDYCKIAIGVMLNTGTVVDFGSNVVSS-RIGGYVSPFTWA-E
SG-----QPYILDLFLRDARKIMARRNRELTLSETELIRILY
>NTL03LI0429_L.inter/4-342
VQRILIDEREVPAGLRSLTRIRSFSEIRNGILNTIQRTKEIYQDAKIFYAHSNSAFQQAFLERNPKLLP-----------
---YDEKDVDLILSSESCL-------------------------------------------------------------
-------------PW--NSIDGIAKNIEVDLELSKDVRKWIRKLKVKSNH---FHVVGKSKHLHVHPSATVYPGVVFDTT
SGPVIVDKDVKITSFSFIEGPVYIGPNSHI-DNARITGATSIGTTCRIGGEVGTCLIGDFTNKHHEGFLGHSVLGNWVNI
GALATTSDLKNNYGVVKIRE--EQDECITGSIKFGSVIGDYCKIAIGVMLNTGTVIDFGSNVVSS-RIGGYISPFTWA-E
SG-----QPYILDLFLRDARKIMARRNRELTLSETELIRILY
>NTL09RC2718_R.caste/4-417
EMIVLFEDEGC-RTFLPLTYTRPVCDLRCGIFTLRERVQALIGKPPAV-ICRPHLARAYGAGRWPLALLSQSVPLTF---
---VNARAMDVRWLPDLCDEPPGTVYITDAGH--ALLGGPV------LLGARLTPWLASAVLPYLLEQHATAALAELRRF
GRLVEVETRLLTFPW--DLIALNGEQIVRDVSLLVERDGWFSAADRPPDHP--SIVVSNPRQVFIHRDARLEPPLALDAR
DGPLVIDA-ARIEPFSFLQGPSYVGSGSLI-ASARIRGETSVGPVCRIGGEVEASIVQGYSNKHHDGFLGHSYLGEWVNI
GAMTTNSDLKNTYGSIRMVI-EGFGQLDSGILKLGCFLADHVKLGIGVHLNGGAVVGTGSNIFGVHFAPKNVPPFTWG--
GEVF---REYRIQSMIDVARKVMARRKVSLSAAQEEVLRAVF
>NTL07RS2647_R.sp./4-417
EPIVFFEDEGC-RTFLPLTHTRPVCDLRCGIFTLRERVRTLTGMTPAV-ICRSHLARAYGVGRWPLTLLSRSTPLTF---
---VNARALDAGWIFDLLDEPVGTVYLTDAGH--ALLGGPV------LLGARLTPWMASAVLPYLLEQRGAAALAELRRI
GRLVEIETRLLTFPW--DLIALNGEQIVRDVPLVVRQDGWICAADQPPAHP--SIVVSNPAHVFIHRDARLEPPLALDAR
DGPIVIDA-ARIEPFSFIQGPAWIGPGSLI-ASARIRGETSIGPVCRIGGEVEASIVQGYSNKHHDGFLGHSYLGEWVNI
GAMTTNSDLKNTYGTIRMVI-EGFGQIDSGILKLGCFLADHVKLGIGVHLNGGAVIGTGSNIFGVHFAPKTIPPFTWG--
GEVF---REYRIQSMIDVARKVMARRKVSMSAEQEEVLRAVF
>CT_1566_C.tepid/1-407
MQVIIVEDEKT-LRFSPLADLKPVYDLVTGCFSLRQRFVEALGARQKLTWHLRRHIAPWFAEANPGSVVNRVLE------
---DEVLLVNGRLICDAAVTQFIDARKIAPGE--ALIQNGN------LLFCRTTAEPL--HVLETVFPDTIDGMVLAGAF
SCVEVSGFRLIENLW--DPVAMHPAMMREDGAALALGRIEGEVHP--------SAILVNPSAITVEKGAEVKAGAVLDAS
DGFIYIGAGAVVEPVALLMENVYIAPGARVKSGARIYSNVCIGGGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNL
GAGTDTSDLKNNYSPVSIET--AHGKMATGQQFLGLLMGEHSKCSIGTRFNTGTVVGISSNIFGNGMPAKYVPSFSWGDG
NPGT---ARYEADKAVETARKVMARRKVEMSAAYEAMFRAVA
>NTL03PL0351_P.luteo/1-405
MQILVFEDALA-ERLMPLAGLKPVYGLATGFRTLREKFEHYAPGVSFT-FHMRRRLARWYAMAYPAAPVNILME------
---DDILLVNGRLVCDAVTGALIEAGAFTPGT--ASMQDGE------VLFARIKPSLI--AETDGSLPDLIDSRRLAEGL
SIERVEGFRLLSNLW--DPVAMHPGELLRDAESLPLGRIDGDVHP--------SAVITDPSATWVAPGAVVRAGAVLDAD
GGFVAVGPGAVVEPLALVTENVYAGAGCRVKAAARVYSNVSIGTGSKVGGEVEDSLIEPFANKQHDGFLGHSYISSWCNL
GAGTTTSDLKNNYGPVRILC--GGREEETGLRFLGLMMAEHCRSSIGTLFNTGTVAGYGCNIFGAGFPPKEIPSFAWG-G
SGGF---IPHEVDRAFQTARTAMARRNVAAGPEYEAMFRSAA
>NTL03CC0296_C.chlor/1-406
MQIVVFEDKRV-EEFQPLVLLKPLYALFVGFRSLREKLEYAVRGRATLTYHIRRYLAPCYQEQHPELVVNRLDE------
---DDILLVNGRLLGDEAVAQVIVEGACEVGS--AFMQNGT------MLFARVHRHML--IGENGLLPDVIDTERLAEQL
RVEEVNGFRLLEHIW--DIIALHPDELLRDAETLELGRIEGEVHH--------AAALVNRSNIYVGAGAVVRAGAVLDAD
DGFVAIGAGAIVEPQAVLMQNVVLAPWARAKIGAKLYSNVAIGMASKVGGEVEDSILEPFVNKQHDGFLGHSYLSSWCNL
GAGTNTSDLKNNYSEVPLRR--NGELVTTGLQFLGLLMGDHSKCSINSMFNTGTIVGAGANIFGGGFVPKEVPSFAWG-G
SHGF---EHYDVEKAVETARKVMARRKVTMSASYETMFRSVA
>SRU_1939_S.ruber/1-417
MHLCLFEDDHV-AGLRPFVETRAAYDLRLAGRTVLATAADAFEPAGLV-LHARPLVAEVTRHAHPEAVVNALPDG-----
---GDVLFLNGRYVAEGGAARRQLEAAPAQDGPRAFVQDDT------LVAAWVPDAAA--RLPDDLLARPALTAGSFDGL
PVTTLNDATLLRRPW--DLLDTLRPALARDAEGLVDAPSGAPLAERPHATVHESVVGVRDEQIHLGKDTTVKPGALLNAE
DGAIVLGPDATVHERAVVRGPCYIGPKTHVKTGANL-EGTATGTWCKIGGEVHDALLQGFSNKSHPGFLGHSVLGQWCNL
GADTNNSNLKNDYGTVSAYAPDAERFVDTGRQFAGLFMGDHSKCGINTMFNTGTVVGTNGNLFGGDFPPRYVPPFSWG-G
ASGL---TTYRLEKACEVAEHVMGRRDTPFTAAHRSLLAELF
>NTL01FJ0108_F.johns/1-382
MNYILFDGPVR-NALLPFTFTRPVADILIGIMTIRQKWEARLG------STITTITEDYLSAKFPMVEM-----------
---EENVMINAAYLPNDALAELV--SDLKENQ--AIFKGDD--------------------VIAFFTTENQEEVDFDTYE
IIQYNEECLTVEHTW--DIFSKNDAAIRADFAFLTEDRKSQPIPK--------SVNVIAPENVFIEEGAKL-EFVTLNAS
NGPIYIGKNTEIMEGTVIRGPFALCENAMVKMSAKVYGATTVGPGSRIGGEVKNSVLFANSNKGHEGFLGDSVLGEWCNI
GADSNNSNLKNNYEEVKLWSYETEGFAKTGLQFCGLMMGDHSKCGINTMFNTGTVVGVSANIFGSGFPRNFVPSFSWG-G
AAGF---TTYVTKKAFETARLVMSRRNIDFDETEAAILEHIF
>NTL02GF1047_G.forse/24-404
MNYILFDGPSR-DNLLPFTFTRPVADIRIGILTLREKWEKLLK------TKTSTKTEEYLSGKWPLILE-----------
---NENIFINSSIVATKGIAEKL--KTIKTNE--KLVYGDN---------------------VVAYFQKGTSDVDLSELK
EIHLNEEPLRVANTW--DIFSKNGKAIELDFELLTAGRDSQPIDS--------SNFIKSEENIFIEEGAFV-ENASLNAS
EGPIYIGKGATIMEGSLIRGPFALCEGAMVKLGAKIYGPTTIGPNCKAGGEINNSVLFQNSNKGHDGFLGNSVLGEWCNI
GADSNNSNLKNNYADVRLWNYNTENFAKTGLQFCGLIMGDHSKCGINTMFNTGTVVGVSANIFGSGFPRNFIPGFSWG-G
SGGT---STYKLEKVLETAQLVMQRKGVELTGEDRKILQYVF
>CAPGI0001_1738_C.gingi/3-383
IERLLFEDKNIIKDFFPFTFTRPSAELRAGILTFSERWQRLLGI-----TQVSYLTADYLQGKYPYTGVSE---------
---EVTLSIYANFLPTPRLLEQL--RSLEVGE--SITYQGR------------------------TLAFVGKSITLSSIP
PIEWEEPLVLFEKPT--DLFTYNDKAIDFDFKLLTQGRTSAPLSPT-------NGFLGDKADLFIEEGAKV-EFATLNCQ
KGKIYIGKDAEVMEGSHLRGPIALCEHATVNMGAKLYGATTIGPYSKVGGEISNSVIWGYSNKGHDGFLGNSVLGQWCNL
GADTNVSNLKNTYNTIQLWDYQKGGYSSSGLQFCGVLMGDHSKTAINTQLNSGTTVGVFANLFSAGFPSKYIPNFAWG-A
SA-----DKYRLDEAFAVAERVMARRGIAFDQKEQDILQWLF
>NTL02CH0485_C.hutch/1-375
MNILFFDEPGVRKALLPLTFTRPTAELRIGIYTIREKWQQYFLN-----AHCYFQTETYLQGKYPSVE------------
---SAEYVINGSVCPNEHLVGEI--LKLQEGE--GLVYQGM-----------------------------ILASKGILKK
HIDYFQEVLVIRQLS--DLFTHNGAEIRSDFNLITKDRTSCAIEDK-------HTIVYNPSNIFIENGVKI-RAAIINAE
DGPVYIGKDAEIQEGAIIKGPFAACQGAVVAMGSKMRGDNTLGPYCKVGGEVSNTIFIGYSNKVHDGFIGNSVIGEWCNL
AAGTNVSNLKNNYSSIKVHSYVHDELEDTGKIFHGLIMGDYSRCGINAMFNTGSVVGVSCNIYDAAFPPKFIPSFAWG-S
AAGF---TEFRLEEACDVAKKGMARRKVELSGDDISILKHIF
>NTL04CK1337_C.Korar/1-371
MQLVIFEDRGV-EALSPITDLIPMQEVVVGGAKQFIRLERLLDMESRW-IVRDHMELRVPESRKPDYG------------
---SPAIILNSRLLSTDLSLKLDYGEALICGS--------------------------------QVVAAKVRSLEWPPEF
ERAKPCEAKLLENLW--DICPTSIVEHLRSDLMKLYGGSEIRV----------NVNVVGRHAVVIGEGVDILGPLTIDAR
EGPVIIEKDVLLEPYSYLKGPLYVGAGSQIVAGSRV-AGSYLGTATRVGGEVTTSVISDYSNKYHLGFLGHSYVGRWVNI
GAGSITSNLKNTYGEVKVRG------ASTGLSRIGAFIGDHAKLSIGTLTYAGTVIGTASHVHG--LVREEVPPFTIY-G
RSLGWEPVEIELDSVIRTYRRMAPRRNLEPDPREEKLLELLF
>NTL02PS2213_P.sp./20-436
MQILCFEDSRV-EQLCPIVHARPAYAITCASFRLLD-WLKTLASECGTGTKACQIQGLIREYLLPIQEADHGLQAPATEM
PSDEDVLLVNARLVPSVQTYETL-KQLLKAGETASVIGKDNGVDTELLAAFITAADVAKLNGSAASDADQTPMARMEELA
RKNISPRFNLKAFQWPHEVVSSHMDAMNDSVNYRIEHGDYTQREDG----------------VFVRPGVSIGEYGSIHTS
GGAIVLEEDVRVGPFCFLEGPLHAGHSTRVIEHSAIKDGVSLGHTVKIGGEVEASVIEAYTNKQHHGFLGHSYLGSWINL
GAGTCNSDLKNTYGKINIEY--GDRKMATGMQFLGCVMGDYSKSAINTGIFTGKVIGVCSMLYG--FVTSNVPSYVNY--
ARLFGQTSLLPPDVMINTQARMFARRKVEQRQCDMDLIQAMY