HMM Seed Alignment: TIGR03676
Download Alignment>SP|O26964|RF1_METTH/8-407
ELFEFKRTLQELSDKRGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPK.PPEK
GLVMFVGMVPRGGPGTEKMETYVFE.PPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDIL
KTLTSGVPGKHKAGGQSQRRFDRLIDLAAHEFLKRIGEHMNEAFLQIDD....LKGIILGGPGHTKEEFLNGDYLHHELK
KKVI.TTVDTSYTGEFGIREVIDKSMDVLSEIDVMREKKLVQRFLRELIN.EDGLASYGEREVRQHLQMGAVEVLLLSED
LKYQRGTYEC..ASCGHRMEKTGR.DLPDTE........TCPSCNDQ.MRLSDRRDMIDDLVEMAEEVGTEVEIISTETE
EGMQLLRAFGGIGAILRYRP
>RF|YP_842792.1|116753674/7-410
EKYEFKRLLDELRSKSGRGTELISLYIPPDKQISDVMAQLREEHGQAANIKSKLTRTNVQSALESAMARLRLIPR.APEN
GVVLFIGAVDIGG.NRTDMYTKVIE.PPEPITTYRYHCDSSFLLTPLEEMLSEKKTFGLIVLDRREATIGILKGKRIEPL
KHLTSTVPGKQRKGGQSSHRFQQLRLIAIHDFYKRIGEAANDAFLSIDQ..KELQGILIGGPSPTKEEFIAGNFLHHELQ
RKIV.DAFDVSYTDEAGLSELVEAAQDRLLDLELTQEKLAMRRFMKELVS.DRGLASYGEKEVRHNLALGAVDLLLLSEE
LRKTRAKVRCqnQSCDYSEEMTRT.PSSPAI.......GTCPKCGSP.LTITEEVDLITELSQLAEQSGAAVKIISTDFE
EGAQLLHAFGGIAAVLRYKT
>RF|NP_247820.1|15669016/12-423
QLYLFKKMLKELKSKKGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKE.PLEK
GVVIFAGMVPRSGPGTEKMETYVIE.PPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINIL
KKLTSGVPGKFKAGGQSARRLERLIDLAAHEFLQRVGQKANEQFLPLLQ.EKKLRGILVGGPGHTKNEFVEGDYLHHELK
KIVL.DTFDLCYTEEFGIRELLEKAAPLLKDVELMKEREAVQRFLKELIKeDGGLACYGEKEVLEALMMGAVDTLIVSEE
LEKYKVKIAC..NNCDYLEEKTVN.KLELIKLEEeLKNAQCPKCGGA.LSIVEEKDYIEYLSELCEQSGAKLVTVSSETE
EGAMILNAFKGIAAILRYKI
>SP|Q8TUM4|RF11_METAC/8-413
EKYEFKKKLESLRDKKGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDK.VPEN
GIVYFTGAVDIGA.NKTSMESEVII.PPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVGKRIQAF
RNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEIFMAVDH..KDLKGVLIGGPSPTKEEFYGGEFLHHELQ
KKIL.GLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIA.DSGKVAYGETQVRANLEINAVDVLLLSED
LRAERVTTKC..SVCGYENKWTRR.WKPGEPAP...TAGNCPKCGSS.LEVTDVIDVVDEFSELADKSNAKVVFVSTDFD
EGSQLMNAFGGIAAILRYST
>SP|O29048|RF1_ARCFU/5-403
MMYEFKRKLEELEKYKGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRK.PPEN
GMVIISGVVNIN..GKEKHITEIIE.PPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL
DWDTSMVPGKHRQGGQSSVRFERLREIAIHEFYKKVGEMASEALLPYKD...KLIGILIGGPSPTKEEFYEGEYLHHELQ
KKVL.GLFDVGYTDESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVAR.D.GLAAYGEEEVRRYIELGAVDTLLLSED
LRYERVKYRC..PKCGKEVEVTVR.EGIEKPPF.......CEEDNVE.MEEVERRDIVLELSELAESTGAKVEFLSTESE
EGEMLYKAFGGIAAILRFKP
>SP|Q5JGK6|RF1_PYRKO/7-414
EMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQ.TPEN
GLALFVGNVSEQE.GVSDIKLWAIV.PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI
DELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANKAFLPLLE.KGELRGIIIGGPGPTKEEFVEGDYLHHELR
KKVI.GVVDISYHGEYGLRELVEKASDILKDHEAVKERQLIQEFFKHLVK.DTGMITYGEKEVRKALELGAVDKLLISEG
YDKVRVRAKC..NNCGWEELKTMS.EGEFHVYK..KQLTHCPKCGSQ.NITFEKWDVAEELIKMAEESGADVEIISLDTE
EGQQFYKAFGGLGAILRYKI
>RF|YP_504247.1|88604069/12-421
RKYEFKKMLERLEAKEGSGTELISLYIPPDKQIFDVTAQLRDEFGQCANIKSKQTRTNVQSAISSILSRLKYYSK.PPEN
GIAVFCGTVNKHG.DRQDLECDIVN.PPEPLNLYLYRCSSRFELEPLREMLEEKYVYGLLVLDRREAYWGFLRGNRIDPV
GGTTSTVPGKQRKGGQSSIRFERLRLIAINEFYKKVGERASEIFLNEKDfFNRFKGLLIGGPSPTKEEFEEGNFLHHEVQ
KRII.GLFDVAYTNESGLPELVEAAEDALKGQEVIEEKHLMDRFFKELVK.DNGLAAYGEQSIRANLEIGAVDTLLLSDK
LRKSRLSIKC..DACGYTEEKTVL.ITPGENPED.IELGSCPKCTSP.LVLADSSDIVDELTYLADQSNSKVAIISDDFE
EGSQLFTAFGGIAAILRYRT
>SP|Q2NEL3|RF1_METST/8-410
EIYEVKKTLKELEDKKGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPK.PPEK
GLVMFVGMIPKGGPGTEKMETYVFQ.PPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDII
KHLTSGVPGKHKAGGQSQRRFDRVIELAAHEFLKRIGRHVDEAFLPLKD...ELKGVLIGGPGHTKNDFVDGEYIHYEIH
DKII.NIVDTSYTGDFGIREVIDESADTLDEMDIMQEKKFMRKFLTGLIS.ESGLSTYGEKEVRQNLQMGAVETLLISEN
LKSKRQTYTC..PACNTVDVITTR.QHQEPPEK......RCPKCNEV.MKITKTQETAEELIELAEEVKTHVEVISIETE
EGTQLDKAFGGIAGILRYKV
>SP|A4FX39|RF1_METM5/8-419
DMYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKE.PLEM
GVIIFAGMIPRGGPGTEKMEVYVLE.PPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL
KKLTSGVPGKFKAGGQSARRLERLIDDAAHQFMVRIGEYATESFMPILE.EKKLKGLLLGGPGNTKNEFAEKDYLHHELK
KKII.DTFDLCYTEEFGIRELLDKASDLLRDLDLMKEKNLIQKFFKELIKdDGGLSAYGEAQVMKYLEMGAIDTLIVTED
IGITRVTVKC..NNCDYAQEVNVK.TNEMFKFEEqLKTKACPTCGGA.MYIDEEKDIIEHLSDLCHMHNTDIIVVSTDTE
EGSQISRAFKGMAAILRYKL
>SP|Q9HKR2|RF1_THEAC/11-410
RRYEFKRALEELSKLHGRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKT.PPPN
GFVFFEGHIATRG.DQTEMYTKIIE.PPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVV
DNVQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGEIANNAFMPKIK...DIRAIFLGGPGATKEYFFEKDYLRNEVK
EKIK.DLFDVGYTDESGLRELVEKASESIKDMKISKEKDLMNRFLREVRKpDGGLAIYGEQAIRDALEQKMVDLLLISEG
LRKVRYTYRC..PTCQAELTLNQE.PNEWPV.........CEKDGTP.MELVAEDDFIEDLYRLAKESGAQVEIISDQSE
EGKLLKQAFGGMAAVLRFIR
>SP|Q8TXB5|RF1_METKA/8-408
ERYRFRKMIERLENLRGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGE.TPEN
GLVVLVGTVQDG..TKEKMVAELIE.PPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIEPV
KRLTSDVPGKHKAGGQSQRRFDRLIEHAAHEFYQKVGEAAREAFEDVKD....LKGIIVGGPGPTKEEFLDGDYLPKDLK
EKVL.TVVDVGNTDESGLREALNKAEEALKEAELVREKRLVRKFMEEAV..NGELAAYGEE.VDELLKMGAVEVLLVSED
LEGYKVILRC..PECGYENIVTVK.EKDEAKKY....VEECPECGEAeLNVEEIKDIVDYYVELAEQMGSNVEIISTETE
EGAQFYNAFRGLGALLRFRP
>SP|Q8TS00|RF12_METAC/8-413
EKYVFKKQLETLKSKNGRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHK.IPEN
GIVYFTGTVDTGA.NRTGMVNEVLF.PPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVI
KHLHSTVPGKQRKGGQSAHRFEQLRRIAIHDFYKRIGDATSEAFLELDP..AELKGILIGGHSPTKEEFNEGGFLHYELQ
KKVL.GLFDTGYTDESGFSELINAAEETLQSIDLLKQKKDMEIFFKEIAT.ESGKISYGEDNVRANLEIKAVDVLLLSEE
LRAERVTLKC..RVCGYENKRTRK.WKTGEAVP...AIGHCPECDSE.LEVTDVIDTVGELSELADKGDARIAFISTDFD
EGSQLMIAFGGIAAILRYNT
>RF|YP_325798.1|76800790/12-411
QKYEFQKVIEELDEYSGSGTQLVSIYVPEDRQISDVVQHVTQEHSEAANIKSKQTRTAVQDALKSLKDRLKYYDTfPPDR
GMVLFSGAVDAGG.GQTDMVTEVLEsPPDPIQSFRYHCDSHFLTEPLQEMLGDKGLYGLVVLDRREANVGWLKGKRVEPV
KSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAEMADDLFVPKRH...EMDGILVGGPSPTKDEFLDGDYLHHELQ
DMVL.GKFDISYTDESGLYDLVDAAEDVLAETEVMKDKAEMEEFFEQLH..DGQKATYGFDATRQNLMMGSVDRLLISED
LRKDVVTFDC.gSREEYELIDRRA.DTPDHT.........CED.GSE.GEAVEREDAIDHLMELAEQRGSDVKFISTDFE
KGEQLLTAFGGIAGILRYST
>SP|Q12V98|RF1_METBU/8-412
QKYEFKKKLESLRGKKGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR.YGT.VPEN
GIVYFTGAVDVGA.NKTNMETTIVE.PPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIEAF
RNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEVFLAVEQ..KDFEGVLIGGPSPTKEEFEAGNFFHHEIE
KKVL.DLFDVAYTDESGLSELVNAASERLEDLDLMVEKKLMQQFFRELVS.DSGKATYGEDNVRENLIIGAVDILLISED
LRAVRETVKC..TSCDYEQKTSRE.FKPGDSSS...PTGNCPKCGSY.LEITEKVDVVDQLSEICDQMGTRVEFISTDFE
EGSQLLKAFGGVVAILRFNT
>RF|YP_001324635.1|150400869/7-418
ETYLFKKALKELKDKKGKGTELISLYIPKGKRISDVSQHLREEISQSANIKSKTTKKNVQSAIEVILQRLKLLKE.PLEK
GVIIFAGMIPRGGPGTEKMETYVLE.PPEPVKTYIYRCDSQFYTEPLEDFMADKDIYGVILVDRNEATIGIVKGNSISIV
KRLTSGVPGKFKAGGQSARRLERLIDDAAHHFMVRIGEYSNEIFLPLLE.EKKLSGLLLGGPGNTKNEFAEKGYLHHQLK
QKII.ETFDLCYTEESGVRELLDKASTLLRDLDLMKEKEVVQRFFKELVKeDGGLAVYGEKEVMKYLEMGAVDTLIITEG
INTSRITIKC..NNCEYVEEKTVK.NEDILKLEEiLKTKTCPRCEGA.LYIDSEEDIIEFYARLCDESNSTLKIISTDTE
EGHQILKAFKGVCAIVRYRV
>RF|YP_001030940.1|124486324/17-426
KRYEFKKSLERLEEKEGSGTELISLYIPPDKQIYDVTAQLRDEYGQCANIKSKQTRSNVQSALSSILARLKYFKT.PPEN
GMAIFCGAINVGG.DKTDLESIIVE.PPEVIQTYSYRCSSTFELEPLKAMLDDKYVYGLLVIDRREAYWGFLRGTHIEPI
NGTNSTVPGKQRKGGQSSVRFERLRLIAIHDFYSKVGERASAAFLAEPNfFEKFKGVLIGGPMPTKEEFASGDFLHHEVK
KRII.GLFDASYTNEFGLRELVDNAQDALRGVGIMDEKAEMSRFFKELIK.ENGAAAYGEDSVRLNLEAGAVDTLLLSEK
LRKARLTIKC..GNCDYEEIKTMQ.IEAGKKFKD.LPFGRCPKCQSS.LFLEKEADIIDELTELADASNTRVEIISEDFE
EGAMLYSAFGGIAAVLRYPT
>SP|A5ULL8|RF1_METS3/8-411
ELYKFKKTLKELSEKKGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKA.APEN
GLVLFVGMIPRGGPGTEKMETYVFE.PPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNIL
NHLTSGVPGKHKAGGQSQRRFDRVIDLAAHEFKKRIGEHMNEDFLALEE....LEGVIIGGPGFTKEEFVKGDYLNYEIK
DKII.ATVDTSYTGEFGIREVIDKSADILNDLDVMQEKKVVQKFLHELVK.DKGLASYGEREVRTNLIMGAVDTLLLSED
LTAMRKVFKC..PSCGNEEEITVKsQSEADKLE.....KPCSNCGEI.LKEESSQTLIEDFVEKAEEMNSEVELISTETE
EGMQLLRAFGGVAAILRYHV
>RF|YP_919928.1|119719433/6-408
ERYKLEKLVEELKKKEGRGTELVSLYIPAGRPISDVLNTLYYEYSTASNIKDRVTRHHVLDALATIINRLKLFRE.TPPN
GLIVFAGYVAGDVPGREKMEVHLIE.PPQKLNVWLYRCDSRFYTEILEEMIRVKEVYGLIVIERDEAAIAILRGKSLEVV
DELTAGVPGKHRSGGQSARRFERIIEQLVHEFYKRVGEHANKIFLPLKD...ELRGIIIGGPGFSKKEFAEGDYLHYELR
QKIL.GLFDVGYGGVSGLYELLEKSKDLIKDVQFMKEREAVNQFLYHLAR.DTGLAVYGEAEVREALQLNAVEKLLLSED
LEKIRVRAKC..TSCKHEFEATLH.SESEVAQL......KCPKCGGE.VEIIENRSVVEELAELAEKTGAEVVLVSTQSA
EGKEFFKTFGGIGAILRYRL
>RF|NP_009701.1|6319619/10-412
EIWKVKKLVQSLEKARGNGTSMISLVIPPKGQIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNT.LPKN
GLVLYCGDIITED.GKEKKVTFDIE.PYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVL
HKFTVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAEVAVQNFITNDK..VNVKGLILAGSADFKTDLAKSELFDPRLA
CKVI.SIVDVSYGGENGFNQAIELSAEALANVKYVQEKKLLEAYFDEISQ.DTGKFCYGIDDTLKALDLGAVEKLIVFEN
LETIRYTFK...DAEDNEVIKFAE.PEAKDKSF......AIDKATGQeMDVVSEEPLIEWLAANYKNFGATLEFITDKSS
EGAQFVTGFGGIGAMLRYKV
>SP|Q8ZU81|RF1_PYRAE/15-373
SAVELRAFVNLLKKFKGYATTLITLYINAERPIPDVVNLLRSEWSTAANIKDKTTRTHVQDTLERIINNLKGEAK.APEN
GMAVFAGFHMINQ.GNYEWVYYVVI.PPQPINTFKYICDTAFHTELLEDQLHAGVVYGIVVIERGEAVIALLKGGQWEVV
KSVEFFVPGKHHAGGQSANRFKRQTEHLAEAFYKMVAEEANKIFLQIPT....LKGIIVAGPGPTKEDFLEEGGLDYRLK
DKIL.AIVPACCANEYGVMEAIRNAQEQLKESEYVKAKEVMDKVMYYAVK.KSEYLVYGRERALKALEMGIADIIVIAEE
L....................................................GEDAVLEVIMKAEEKGIKVEVVPRGVE
ESKTLMQAFGGYVALLSTPV
>SP|Q9YAF1|RF1_AERPE/13-370
SKRELARLLKELKKWSAPATVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTS.TPPN
GLVLFCGEDMSTG....KFECFMFS.PPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEVL
KELEGFVPGKHKMGGQSQRRYERIIEQMVDEFFKKVGEEASNLLVPLAE.KGVLKGVIVAGPGLAKQEFVEGNYLDYRLK
KILApELVDVAYQGLQGLKEAVMKAEKVVEAQMYRDAVNAMEEFKLHLAK.GTGMIVYGEKDVEAALEMGAVKTLLIHE.
.....................................................SREDLEEWVEKAKSSGAQVIVVPESLA
EAEWFLKTFGGLAGILRFRI
>SP|Q97W96|RF1_SULSO/9-368
NKQELKALIKELKKWKAPATVLLSLYIPPGRPIPDVVNLLRQEYSIAQNIKLKRTRDAVLSAIGAAIDRLNKIPK.IDGN
GLVLFCGENF....DTEDFKCFMFS.PPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKGARIEIL
EEIEGFVPGKHMMGGQSQRRIDRIIDEMYHNFLKEVGEKVNAYFMPFVQ.NGKMKGVLLGGPGYAKEDFYKEDYVDYRIK
NLILqPLIDVSDQGEVGLREMIMKAEDLLKNQQYIEVEKLLEELKYHLAK.DDGLIIYGKEQIKKAMEIGAIEAIVIHED
S....................................................TDKELEKLAQDAENYGVKVFVVGDEVP
EAEWVKKTFNGIVGKLRYRL
>RF|NP_963346.1|41614848/5-357
EKYKLKSLLRQLKSIEGRGTELVSLYIPSNYPIGKILDQLNYEYATAANIKDDTTRKNVQAALAKIINYLKDFKK.IPEN
GLVIFAGNIAGR..GDQDVRLWAIV.PPEKSNLKLYRCDSKFYVEPLEEMLEEKKLYGIVTIDKGEAAIGLIKGRKLIVL
DEFESWVPRKHHKGGQSARRFERLIDQATQEWLQYVAEKARQYFDKYKD...KIQGIIIGGSGFAKHDFIE..YLPYYYK
DKII.AIVDTGYSDAYGLREALYRAEDKLKELEIEKERKILSDLFKAIAL.GRKDIALGYEEVKKYLEQGLVQKIIVMED
F......................................................PKLDEILELAEKHNVDVEIIEGGTT
EAEQFRPI..GIAAFLYYAS