HMM Seed Alignment: TIGR03399
Download Alignment>SP|Q8ZLI0|RTCA_SALTY/5-325
IALDGAQGEGGGQILRSALSLSMITGQPFEMSGIRAGRAKPGLLRQHLTAVRAATEICGAQVNGDELGSQQLRFTPGPI-
RGGEYRFAI------GSAGSCMLVLQTVLPALWFADGSSRVEVHGGTHNQAAPSADFICRVWEPLLARMGISQRTTLIKH
GFYPAGGGAAATVVEPAAS-LRGLTLISRGETLRTTAEALLAA-VPYHVGEREVATLEAHF-----PQAEKNVVA----L
EGGCGPGNALSLMIQSE-QLTELFAAFGVKGTSAEAVANQVAHEARRYLASPAAVGEHLADQLILPLALA-GEGAFTVAR
ASAHLLTNIAVVERFLPVRFS
>SP|Q9HVJ9|RTCA_PSEAE/6-325
IELDGS--EGGGQILRSALSLSMTSGQPLRIRNIRGRRSRPGLLRQHLTAVRAAAEICAAEVEGAELGSRELAFRPGAI-
RAGDYAFAI------GSAGSCSLVLQTLLPALLAANGESRVRISGGTHNPLAPPADFLRDSWLPLLQRMGAEVDLELLRH
GFVPAGGGELLARVRPAR--WRPLQLEHPGAALRRQARALLAG-IPGHVGERELERVRQRL---GWSDEERQLEF----L
AEDQGPGNALLLRIDCE-HICATFCAFGQAGVSAERVAEQVATQAIGWMESGCAADEHLADQLLLPMALA-GAGSFTTPR
LSAHLQSNRRVIERFLPVRIG
>SP|Q1IS76|RTCA_ACIBL/11-333
IVIDGSQGEGGGQILRTALSLSMVTGQPFTIEKIRANRERGGLLRQHLTAVLAAAEISGANVTGAELGSRTLTFAPQRV-
TPGDYSFAV------GTAGSATLVLQTLLPALMLANKPSNVVVEGGTHNMAAPPFDFLAKTFAPIIESMGPKLKLTLDRY
GFYPAGGGKITAEIEPVEK-LKQLELLDRGEVLQQNAVALLAH-LPRHIADRELETASNIL----GLAPESTRIL---GT
KNSAGPGNALMIEVQTE-RHTEIFTAFGKVGISAEKVAEEAAVAAAQYVASSAFACEHLADQLLLPIALA-GGGSFTAVR
QTMHARTNIEIIRLFLPVSFE
>SP|Q609M1|RTCA_METCA/4-336
LRIDGSYGEGGGQIIRTALSLAALTGTAVRLENIRARRRKPGLAAQHLTAVKAVALLCDARIGGAELGSQTLEFIPGRPV
RAGDYTLDVGEAREGGSAGAVMLVLQTVLPPLALAEGASTVSLRGGTHVPMSPPFDYVREVWLPTLARMGVRAELSLVRS
GWYPVGKGEVRLVVAGGRRSLEALKARHRGTLQAVTGRALAAN-LPAHIPERMAARARAVL-ADAGIAAAIEPAV-----
LQAACAGAGLFLTARYD-HCLAGFTALGRRGKSAERVAEEACGALLAHHRSGAALDQHLADQIVLPAALCREESLFSVER
ITPHLTTNAWVVDRFGLARVD
>SP|Q3M6L1|RTCA_ANAVT/2-333
IDIDGSYGEGGGQVLRTSLSLAAITGEPIRIAGIRAGRRKPGLAAQHLTAVRAAARICHGELQGDALGSTMLEFIPGGGV
KAGNYIFDVSEVQQGGSAGAITLVLQTILLPLALADGDSHITLRGGTHVIFSPTVTYIERVYLPMLCRMGIKAQVKLGAW
GWYPRGGGEVNLQVKGGCQ-LCGLNLLERGELKRVQGLAVATE-LPAHIPQRMANRAENLL-RTAGLRVSMQALR-----
EKGVAPGAGIFLTAEYC-NSLTGFGGFGRLRLSSEKVAEIACGQLLQFHETGAPVDEHLADQLLLPAALASESSQYRVAE
VSTHLTTNAAVIEKFGLGKIT
>SP|Q8ZST4|RTCA_PYRAE/3-329
VRIDGSYGEGGGQILRTSIALSALLGRPVEIVNIRAKRANPGLQPQHLTGVKVAALLTDAEVKGAEKGSTRLYFEPKTL-
KCGNFSIDI------GTAGSISLIVQTLAPILLYAPCPTQITVTGGTDVAWAPPIDYMRFVFTKVLERFGAKLSIELIRR
GHYPRGGGRAVVRAEPVKR-LKAVESEEFGNVVKISGISHAVN-LPPHVAERQAKAAREEL-SKMGLDADIAIEV----R
NDGLGPGSGVVIWAVSDAGNVIGGDSLGERGKPAETVGKEAAQKLIAVLKTRASVDPHMADMAVLYMALAEGRSRISTSE
ETMHLKTNMYIIEQFLRVKFS
>SP|O77264|RTC1_DROME/7-338
LEIDGSYLEGGGQALRNALSLSCILGKPVRVVKIRASRPSPGLSHQHLHGLNLLRDITNADVVGNYLLSSTVEFTPRTI-
LDNTYRVET------HTAASITLIYQMALPVLLFAGRPSRLIVSGGTNVDFAPPVEYMQEVLLPNLKHFGVSFDLKVQRY
GFYPRGQGRCQLDVQPVTK-LNSGKLVAFGRIKSVSGVAYCAGRLPVNIAIDMQQTAQREI-HRLWPSQQCSIEPIKHSR
QKAFHNGAGILMTVNTTSDVVLGASALGKKRIDGHVLGSEASCQLGDYMRKQVCVDDYMQDQLIIYMALAVGRSTMRTGK
LTNHTRTAINVAEQMTGVKFD
>SP|O00442|RTC1_HUMAN/6-337
VEVDGSIMEGGGQILRVSTALSCLLGLPLRVQKIRAGRSTPGLRPQHLSGLEMIRDLCDGQLEGAEIGSTEITFTPEKI-
KGGIHTADT------KTAGSVCLLMQVSMPCVLFAASPSELHLKGGTNAEMAPQIDYTVMVFKPIVEKFGFIFNCDIKTR
GYYPKGGGEVIVRMSPVKQ-LNPINLTERGCVTKIYGRAFVAGVLPFKVAKDMAAAAVRCI-RKEIRDLYVNIQPVQEPK
DQAFGNGNGIIIIAETSTGCLFAGSSLGKRGVNADKVGIEAAEMLLANLRHGGTVDEYLQDQLIVFMALANGVSRIKTGP
VTLHTQTAIHFAEQIAKAKFI
>SP|Q8TZC9|RTCA_METKA/4-335
IEIDGSYGEGGGQILRTAVGMSALTGEPVRIYNIRANRPRPGLSHQHLHAVKAVAEICDAECEGLEIGSTEIVFEPGKV-
KGGEYEVDI------GTAGSVTLLLQAVKLAAIAADGPVEMEVRGGTDVKWSPPVDYEINVNAHYLDRLGYRYELEVLRR
GHYPRGGGIVRARMEPPKR-LKPLEAVKFGELESVRGISHCVR-LPPHVAERQAKAASEIIERELGIRPEIEIETYPKGR
DPHLGPGSGIVLWAEDDQGNRIGADALGEKGKPAEVVGREAAEQLVQRLRTGMALDEHMGDQILPFLAIADGESVFGVTG
VDPHLPTNAWVVEKFLPVSVE
>SP|Q8U0N7|RTCA_PYRFU/2-324
IIIDGSYGEGGGQILRTSIALSAITGEPVKIINIRANRPNPGLRPQHLNAILALKKLANAKVEGAEVGSREVTFIPGEL-
KGGEIRVDI------GTAGSITLVLQALLPAMVFAKDTVEFKITGGTDVSWSPPVDYLINVTMFALRKIGIEGEIKLLRR
GHYPKGGGIVAGYVKPWIE-RKELIAEEFENIYKVSGISHATN-LPAHVAERQAKAAMEEL-KVLGVPIEIKKEV-----
SHSLGPGSGIVVWAETE-CLRLGGDALGKKGKPAEEVGREAAQELLSQVKTKACVDKFLGDQIIPFLAISGGK--IKVAE
ITKHLITNVWVVEQFFGKVFE
>SP|O28837|RTCA_ARCFU/2-319
IEIDGSFGEGGGQILRTAVALSCVTGKAVRIRNIRANRPKPGLAAQHLKGIEAAKIISNAEVEGLRIGSTEIVFNPGSV-
RGGNFRVDI------GTAGSVTLIFQTVLLPLLFADRDSTLTVTGGTDVAWAPPVDYFKNVTLRALREMGAECELEVLKR
GYYPKGGGMVRLTVRP-AE-MKGVVYERIDEI--VRGVSHCQN-LPGHVAERQASSARNFL-EERGIRAEIRTEV-----
LKGLSTGSGIVLWSGYK-----GGSALGERGKRAEVVGQEAAESLYRELMSDAAFDAHLADQVMPFAAMARGRTEYTTSE
VTMHQKSNAYVINTFLGKVVK
>SP|Q60335|RTCA_METJA/4-321
IVIDGSYLEGGGQIIRTAVSLSALTQKPVKIINIRKKRKNKGLAPQHVSAVKAVKKLCNAEVFGLNVGSEELTFIPSKL-
SPKDFTIDI------GTAGSISLVIQTLLPLSLGINKKFTVKIKGGTDVKRAPPIDYVKNVTLKILRNFGVLTELKVLKR
GFYPEGGGEVIFEVKP-SK-IKKFDLIEHSKSNLVEGISYVQN-LDESIARRMRKKAVDLL-NKEKLLPNIKIEC-----
SKGISTGAGIVLWNDT-----LGGSCLGEKGLRAEIVAERAVNELLKERESGMALDKYMGDQIIPFLAF--GKGIVGVSE
ITNHTKTNMWVVKHFLDVDFE
>SP|Q974U1|RTCA_SULTO/2-324
IEIDGSFGEGGGQILRTSLTLSALTKKPFRIYKIRANRPKPGLQRQHLTAVEAVKKLTNAKVKGDFVGSTELVFEPEDIV
EKGDFEFDV------GTAGSVTLILQTILPLLI--NRNIKVTIKGGTDVPKSPSIDYIRLTFLSLLEKIGIRVNLILIRR
GHYPEGGGEIKITEVKGNP--SSFSLMERGELLMIKGISHVSS-LPSHIAERQAKSAKEFLLSKIKIPVEIEIDV----R
ENERSKGSGIALTAIFE-KTFLGSDSLGEKGKRAEIVGEEAAKSIYEEIISNATVDRHMSDMLMLYASLYYGE--YIGSE
LTSHARTNSEIIKKFLNVNIQ
>SP|O27937|RTCA_METTH/2-323
IVIDGSEGEGGGAVVRVSTALAAVTSRSVRVYNIRARRSRSGLSHQHLTAVRAVARISNGTLRGDELGSMELEFSPGRV-
TGGTFNFDV------KTAGSTGLVLQAIMVAAAASEGEIDVTVSGGTDVLWAPTCDYLREVTIPVLEMMGYSARIEIIRR
GYYPEGGGRVHAIIEP-SE-LRPITLEE-SEIHAVRGISHSRN-LPVHVAERQAESAMKIL-RGAGLDVDIMVED----A
SGPVGRGSGITLWAEGN--TRLGAVSLGKPGKRAEKVGSEAARELLGFIESGSPLDRYMGDQIIPYMALT-GDSRVRTCE
LTLHAETNIILSEKITGRRFR
>SP|Q2Y720|RTCA_NITMU/2-328
QEIDGSYGEGGGQLLRTSVALAAITGQSVRVYNIRAKRSNPGLAPQHLTAVKAVAALCRARTEGMEVKSQEIIFRPGPL-
RGGEYDFPI------GTAGSVTLVLQAALPVALACGEKVRMNISGGTDVRAAPPLDYFRYVLLPLVYSMGARAKIEVLLR
GYYPRGGGKVVVDVEPCLP-LRPVLLNASEGLEGITGFVHISN-LPKHIIHRMANGALAEL--STFPTPAVGLEV--FGK
DDAIGEGGAVLLTAHKE-HSRLGASAVAERGVPAERLGAEAGRCLREEILSGATLDIHAADQVLIYLALASGVSCFLTRE
LSSHAATTIWLLEQFLPVRFQ