HMM Seed Alignment: TIGR03357

Download Alignment

>RF|YP_263148.1|70733373/23-173
QPSLLDRLTDDEPGNLKESPDKRVLSLSQLKASVLRDLAWLLNTTSLLEADA-TLHTPAGTSVVNYGLPALAGYSASSID
IPA--LEALIHQAIATFEPRILRSTLRVRARTAPGEMNHNALSFEIEGDLWAQPMPL-RLLLQTDMDLESGHVRV
>RF|YP_349138.1|77459631/7-141
LPPLFERL------ASSEGDGAREFDRQDLLDSVHTELGRLFNTRRGPRT------LTSPPSVIDYGIADWSALQQQRSD
DRRR-LARDIREAITHFEPRLLLGEVQVNPLPE----HPQRLSIRLLGELRSGSQHW-PVAF--VIEPGNEGLEV
>RF|YP_295939.1|73541419/9-148
PVPLFERL-----ASGGTEPSAHLLDGAQLRQSVARELGRLLNTRSRLCA---EAFLASEGTVLDYGVPDCSSRSLQSGP
DRAL-IAALVRHAVTLFEPRL--RNVNVQFSTSLNT-ALAQPVLLIDGELCLGQAPE-RVSFELAA--GDETAQL
>RF|YP_821534.1|116619378/11-159
TQSVLDRLIDRDPASTSETPPTRAQSVRHLKVSLRRDLELLLNSRRTPEAAG-SEYEELEKSLYNFGLPDVTSLSWDSAR
DRAR-LARMIEKTLSTFEPRL--SGVRVVAVEATTG-AQHVMRFQIEGMLDMDPSPE-PISFDTLLQLSSGEYQV
>GB|AAS58123.1|45332447/8-156
RPSVLDRLFDDFPQERTERTSDRRYDLAHFRWAVRRDVEDVLNTRSALSLDI-DQWPELEKSPLNYGLPDCSNLSAANAE
DREW-IRQHIERAIDLFEPRL--SQVRVHIHLDEKT-GISQLIFRIEALLDVDPSPE-PVMFDAVLDVSTQLYRI
>RF|YP_435382.1|83646947/11-158
RPSVLDRLIDERPDLKVEPEKNRHQVLNELRESVRRDLEDLLNTRYRPISAS-DNLRQLDESLINYGLPDLHTINFLSAE
GKSQ-FCRTVEQHIAMFEPRF--KSVRVITLDEDWA-EGATLHFRIEAVLFAEPAPE-EISFDSSLEPISAIVN-
>RF|YP_527007.1|90021180/11-159
LPSLLDRLIDDDPDRSLEAVKPAGVVLADIKANIRRDLENLLNTRIYRQLSI-DAYPELQKSLVNYGIKDFSHVQFDSDE
ERIQ-FAWSIRRAIEDYEPRF--QWVQVDIEPFGED-FQRTLYLKISATLLIEPDPV-PLIFDSRVRTTDRALKL
>RF|YP_574319.1|92114391/8-156
IPTLLDRLLDDAPQHSSEVQPGHRCSLADYKQSVVRDLELLVNTRRELVAEELDAWPTLQGTLLDYGLPDFISRGVRSTE
DRRL-IQRQLERTIEQGDRRF--SSVHVQLL-NQDS-HDRILQFRIEAVLSLSEASQ-RVAFDAVLQVNTRQYKV
>RF|YP_285383.1|71907796/6-150
EPSLFDKL----FDDQPVGAARRRLSLEQLKDSVARDLEALLNTRVVLDDGFETTYPLTMRSVAGFGLSDFAGLSLANVH
DRRR-ICASIESAIAAHEPRL--REVRVDLE-LHRK-TVNALYFSINAVLVVRPAQE-PVSFDALLQPTSLQYSV
>RF|YP_452320.1|84624948/5-153
EPSLLEKLFDDTPKSTGGSHVFKAISIDQYKESVARDLEGLLNTRSAFSEEGLTEFPNCKQSLLTYGLGDFSAMSLANGY
DRTM-ICRSLEQAIARHERRL--RNVHVTLE-TAGQ-FGGGLHFTIHALLDMEPARE-PVSFDAMLQPSTLQYSV
>RF|YP_932801.1|119897588/1-145
MPSLIDRL-----MATGGGAGTTAPTADTLRTALARDLEALLNTRATCALDATSEFPRASGSLLTFGLPDFDSLNLHGAP
DRRR-LTDEVRRAIERNEPRL--ARVQVSMV-ASPA-NGQPIRLRIAAELRSDARRRTPVSFDATLQLSSNAYRV
>RF|NP_903655.1|34499440/10-157
LPSVLDRLLDDEP-DQSHIESISLFELPQFKRALARDLEALLNTRLMPLDELMESFPQARDSLLTFGIPDLSGISLLNPD
DREL-LREQLRRSIELHEPRL--SRVRVNLD-APRE-MERHLRFRVDAVLKVHPHRP-PVTFDATLQLSSNVYKV
>RF|NP_534816.1|17938027/16-164
SRSILDRLLDDAPDAETDMLVSLKDQASEMREVIRRDLEALLNTRRNPAGPP-AVLKELADALVSYGVDGILSANLVTDA
SKAQ-LARSIERRISLFETRL--ADVHVTILKNRTD-GDRALRMRIQASFRLQEGMP-PISFESRIDPSTQRFLV
>RF|NP_762397.1|27366870/7-153
VPSLMDKL--TDSDPLSSIDRDFPLTRHALMDSLRRDLESLLNSRINWMTLS-DELREIQTSILRYGLPDFSSMPFSSAD
GQQV-LCQRVKETIQQYEPRL--NYVSVAIAEDKNP-LDRILKLRIKATCMIDNNEQ-ELVMDSEVEPVSLGIKL
>RF|NP_930449.1|37527105/3-132
KPSLYESL---FGNFNCGLELHQVSEEEQVILSVLDNMQRILNSRAGSLT-----------HLPDYGLPDLNTILRGLPT
SSQR-LISTIEHTLLTYEPRL--KRVDITLL--PEL-APGHLRYDINAELK---GVG-LVRFSTEFV-PEGNVLI
>RF|YP_299449.1|73539082/5-134
GPGLFEAV---TGYFANGVAVDEFDPATQTFLSVQDNIQRILNSRRGGLA-----------HLPDYGLGDLSRIYRHLPA
SAHT-LQREIEATLLRYEPRL--RAIDITI--EETE-PGMLLSFTMSCHLHQAG----LVRFGTHFT-PDGKTRL
>GB|ABM60952.1|121588372/2-133
TVGLFDRL---EGGTGRPPPHTGTMPGSESRASVVRHILRLLAARRGRPA-----------HLAGYGLPDLSSYYHDLDG
AAAC-LATAAQELIPRYEPRV--VSLAVHAQPASVE-TGYVLWLALRAQLHRGK----HLTLELAVD-GNAGVHL
>RF|NP_927725.1|37524381/12-142
SASLFERI------QGKNSGSSRQSRMRELLNSIKRHLNHVLNTHPGACQ-----------SAADLGVIDLNDATTTATD
FKQS-IEQAIEHCITNYEPRI--SSVTVNAI-HDDS-DPLLLRFHISAQVSLDDIHD-AVEFNIQLD-NNRRYCL
>GB|ABG57137.1|110277128/12-142
AASLFDRI------RGEGLGSSPRSEVDELVDSVKRQLDQILNTRPGNCR-----------SAPDLGVIDLNDATQGSAD
IKGR-IREAIRQCIRRYEPRI--IHVDVRSP-DYQA-SPLEMSFQVTAHVRLEHIEQ-VTSFNVHMD-SHRHYRM
>RF|YP_851425.1|117622512/9-140
TGSLFERI------REAANPPSYQNPKEALIRSIRRNLRQVLNTRSGSCY-----------GSPELGITDLNDESLASSD
FRRE-IRKSISQCILHYEPRI--TDVVVTAAAPDEY-APVELCFHIVATVDVSETRG-VFEFDILLD-NHQRYCV
>RF|NP_285922.1|15799910/9-136
TGSLFERM------EASSARNRQGGSIHSLRQSIRQNLRNILNTRSGSCR-----------GAPELGIDE----PEGAEN
FRES-MSRAIEQCIERYEPRI--SHAEVQAVVSSAS-SPLDMTFHITAWVTFNETHE-VLEFDMAPN-GSQHYRV
>RF|NP_232510.1|15600880/12-144
GVGFFERL----EANAKPMSLTRGPDAWDVLESIKRNVSNILNTRIGGAQ-----------SAPHLGLVDFNDATLETLD
LSVR-IKLAIQQCLERYEPRL--TRVLVRAD-QDSF-NPLTLRFHITATINSEALHE-KVQFSLLLD-QSRKYRV
>RF|YP_960987.1|120556636/13-144
TGSLFERL-----EQAAAPAGQSMGEFTHVVESIKRHLVRLLNAHPGNSS-----------SAPDLGLLDFNDATLGTHD
LSIQ-IRGAIRQCIEKFEPRV--KRVDVVAM-PPGP-DPLQLKFQVTVYLNVAGSDD-RTTIDLVLD-DKRYYRV
>RF|YP_740894.1|114319211/10-140
GPRLFERL-----GGLPLDPGPSAADGGVLIESIKAHLADLLNSHPGHCA-----------CAPGLGLVDFNDATLGALD
LRLS-IRRAVRDCIERYEPRI--RQVSVEVM-DQGS-EPAALRFKLHAVLNTDRGDQ-RTTLDLML--SDRHYRF
>RF|NP_250350.1|15596856/4-134
YGSLFERL------NGDADKRVGWSREVSAMASVAAHLGKMLSTRAGSVQ-----------TLSDYGLPDLNDMRLSLHD
SLSQ-ARSAIEGFIEAYEPRL--SDVRVVSL-PRDN-DQLRLAFSIEGLLEVEGFKR-QVSFSACLD-GSGQVKV
>RF|NP_792355.1|28869736/4-134
NGSLFERL------ADKTQKKTDLNEEERITASIATHLAKLLGTRAGSVN-----------TLPDYGLPELNNASLSAHD
TVRQ-SRLAIEKAIRDYEPRL--SEVHVMSD-ESSW-CVLKRTFSIDASLDMNGVKK-TVVFSIAVA-GDGHVIL
>RF|NP_951489.1|39995538/3-133
EERLLERI----RSLERDPSRRGGTDRGRLVDSILAHVRRIINTRRGSVP-----------IAPDFGIPDMLDVLQSYPD
SVRE-IERSIRAAIQGFEPRL--ADVRVAFV-PQED-DVLALRFAISARLGSDGG---AVCFETLVD-TDGKVTV
>RF|YP_632971.1|108762514/3-130
SRGLLSRI---------AEGNGTLAPPGDVVESIAEHLRNLLNTRKGESV-----------ASPGYGILDLNDIVHSYPS
AIPR-MTQSIRQAIQEFEPRL--KSVVVHYN-ADPV-DPTALRFDITAQLATRDRRG-MVRFHTQVH-PGGRVDL
>RF|YP_338390.1|77358962/16-149
ERRLLERI----ANREAGGEHDRPPPADVLAHSIIDHLRRILNTRQGHVP-----------IDPAFGVPDFTNLAGGFAQ
GSAREIEAQIERVITCYEPRL--KAPRVSLA-ERGP-DAATLRFSLDARLVIDAHDV-PARFLTTVT-GNGKIDI
>RF|NP_797783.1|28898178/22-154
GYRLLERI----ELGEPKNCYEKVVSHKHLIESIHLHLADLLNTHSGNAM-----------IDSEYGLPDFNDVLSNNTN
LVRH-IQKNITATIERFEPRL--LNVEVHYR-EDHH-NPLQLGFGIRGEVSHNGGKV-PMSIDVYMG-TDGQFNV
>RF|YP_204385.1|59711609/3-133
NQRLFERL------LSGTTQSNQSVTAQHMTDSIRSHVSQLLSTRQGAAL-----------ICPDLGLPDLNMSHMSPHD
AILH-IKREVERVIARYETRI--INPQVRYL-GDIY-NPLRLYFDVSGDVIINGQNT-AISFTAHAQ-AANRKAE
>RF|NP_744766.1|26989341/1-134
MSGLFDRL---MVDQCTRREASRRESASHKFAAIKRHLETLLNARQGCSQ-----------SSPELGLRDFNGHDVSNGD
LLVQ-VSADIRRTLQRFEPRI--QVRTLNAV-PDTH-APLELHFRLDCLVQVNNHAE-QLQLELLVD-GHNRYTR
>RF|YP_358222.1|77920407/2-132
SQTIFDIL---TSDPSGESRGELRSSEEDLYLSIRNHLRRLFNSRRGSLT-----------HLPHFGMPDIAALYLELPY
TSDR-IMSALRQCVIEFEPRL--GHPHVRAI-HHED-DRDVTQFELFGETPLGR----RVKYIVSLY-RTGAVEV