HMM Seed Alignment: TIGR02027
Download Alignment>SP|P12073|RPOA_WHEAT/29-335
YGRFILSPLRKGQADTVGIALRRALLGEIEGTCITRAKFGS.........VPHEYSTIAGIEESVQEILLNLKEIV....
..LRSNLYGVR.......DASICVKGPRYITAQDII........LPPSVEIVDTAQPIANLTEP.IDFCIDLQIKRDRGY
QTELR...KNYQDGS...YPIDAVSMPVRNVNYSIFSC.GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFL
H............AEEEGASFEENKNRFTPPLFTFQKRLTNLKKNKKGIPLNCIFIDQLELTSRTYNCLKRANIHTLLDL
LSKTEEDLLRIDSFRMEDRKHIWDTLEKHLPIDLLKN
>SP|O66483|RPOA_AQUAE/20-312
YGRLVVEPLERGFGTTVGNSLRRVLLSSISGTAITAVKIYG.........IYHEFSAIEGVQEDAIELIANLKKIK....
..FLMKGDSD...VE...ILYLQKKGEGEVKASDIK........TPPNVEILNPDQYIATITDPNKELNIEIRVERGRGY
VPVEE....MEAIGEVGWILVDADFSPVKKVGFRVDNVRVGKKSTYERLTLEIFTNGIKTPDQCMQEAIEILKKHYELLE
N............IFTEKPTVP..QKVAVDEL............AE....KLSLSIEELDISQRALNSLKRIGITTIGDL
VRMTEDELKSTKNIGRKALAEIKEALHK.LGLELGMN
>SP|Q9X1I2|RPOA_THEMA/23-335
YSRFSLSPLERGYAITIGNALRRVLLSSIPSLAIVGVRFIKPE.......KYHEYDYIEGVKEDILDIILNLKKVQ..FR
INVTVKGTIK.........MEVEKKGPGELVAGDIK........TPAGIEVVNPDLHIATLNSK.ADLFFEVYAEVGKGF
VPVSE....REERPDVGWIPIDGVFSPVIKVNFLTENVRVGKRTDYDKLILEIWTKKSIRPEEALRKAADILINHFKIVT
EGLPELKISEEYIITSEEEEAEVPASEHEEEHR.........ENSD....VYNRKIDELELSVRSLNCLKRAKIETIGDL
LSKTEEELLKIKNFGQKSLDEVKEKLKEKFGLELRKG
>SP|Q50295|RPOA_MYCPN/22-327
YGIFEVGPLESGFVITIGNAMRRVLLSCIPGASVFALSISG.........AKQEFAAVEGMKEDVTEVVLNFKQLVVKIS
DLLFEDGEMVEPPLERWPLLTVTAEKAGPVYAKDLE.......CPAG.FEVVNKDLYLFSLQTD.KKVTVNVYVKQGRGF
VTFLE...NREMINSLGIIATDSNFSPVLHCGYEVQELKTSKQKITDHLTFKIATNGAISAVDAFAMAAKILIEHLNPIV
N............VNESIKALNIIQEKAEERR............VR....SFAKQIEELDFTVRTFNCLKRSGIHTLQEL
LSKSLADIREIRNLGKKSEREIIKKVHE.LGLKLRS.
>SP|Q9PQN4|RPOA_UREPA/21-327
RTVVKIAPLEIGFGDTLGNALRRICLSSIPGASMFAVKFGG.........YSHEFQPYEGVKEDITHIILNLKNLAIKID
ELIYSEDYFNNLLIDKWPKMKINFKGPGVITAKDIV.......CPVG.FEIVNQDLYIAEVTKP.IDVEIEIFAKTGRGR
VDFNT...NKDFVSTLHIIATDSNYSPVLHYAYNVEMIKDSKSSMSEILTIDIATNGTISGSEAIAIAAKIMQAHLEPIV
N............IDKTINEMIIMREREEEEK............RQ....NASISIDDLDLTVRAYNALKQSGINTTAEL
IELTKSQLEKIKNLGRKSVTEIIQKLTE.RSLELKKD
>SP|P56001|RPOA_HELPY/23-321
RVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEG.........VHHEFDSLRGVTEDVSLFIMNLKNIRFIAK
ALVGQDSSLENQSVV....VDYSFKGPMELRARDLN.......SEQ..IEIVNPEMPLATINED.AQLNFSLIIYKGMGY
VPSEN...T.RELMPEGYMPLDGSFTPIKKVVYEIENVLVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFG
E............R..PIANTEYSGDYAQRD............DAK....DLSAKIESMNLSARCFNCLDKIGIKYVGEL
VLMSEEELKGVKNMGKKSYDEIAEKLND.LGYPVGTE
>OMNI|NTL01FN1859/38-338
KGQFIVEPLYRGYGNTLGNALRRVLLSSIPGAAIKGMRIEG.........VLSEFTVMDGVKEAVTEIILNVKEI.....
.VVKAESSGERR.......MSLSIKGPKVVKAADIV.......ADIG.LEIVNPEQVICTVTTD.RTLDIEFIVDTGEGF
VVSEE...IDKKDWPVDYIAVDAIYTPIRKVSYEIQDTMFGRMTDFDKLTLNVETDGSIEIRDALSYAVELLKLHLDPFL
E............IGNKMENLRDDIEEMIEEPMDI.....QVIDDK....SHDMKIEELDLTVRSFNCLKKAGIEEVSQL
ASLSLNELLKIKNLGKKSLDEILEKMKD.LGYDLEKN
>SP|Q8KAJ8|RPOA_CHLTE/22-320
FGRFIAQPLERGYGVTLGNAMRRVLLASLPGTAITGIKIDG.........VFHEFSTIDGVREDVPEIVLNLKKVR....
..FKSNCKRS...CK....TTLTLAGPKDFLAGDIV.......AQEGEFEVLNKDLHIATINSE.ATVTIDIYIGRGRGY
VPAEE...NRSDGMPIGFIAIDSIYTPIKNVKLTVENTRVGQKTDYEKMILDVETDGSITPDDAISLAGKIINDHITFFA
N............FSPTEEEFSEEEYKQLDDE........FESMRK....LLQTKIEDLDLSVRSHNCLRLAEIDSLGDL
VSRREEELLNYKNFGKKSLTELKEQLEK.FNLKFGMD
>OMNI|PG1911/21-321
IAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIEG.........VEHEFATIPGVLEDVTNIILNLKQVR....
..FKQIVPNADV.EK....ATIVISNSEVFRAGDLN.......AQLSNFEVLNSNLVICHLDKS.ATLTMEFSINKGRGY
VSAEE...NRAEHNELSTIAIDSIYTPIRNVKYAVENFRVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFA
E............NKIAIEYVDIVDTDEFDED........SLHMRQ....LLKSKLSGLDLSVRALNCLNAAGVDTLGDL
VSLSRSDLMKIRNFGKKSLTELDELLAT.LNLSFGMD
>SP|O83242|RPOA_TREPA/27-330
YGKFTASPFETGFGTTVGNCLRRVLLSSIQGYAVTGVRITSFDADGVAHFISSEFEQIPHVREDTLEILNNFKRLR....
..FLLPQGAES..ST....FTYEFRG.AVSLTGKDF.......AKKFQLEVLSQDLLIMEMMDG.AHVEVELHVEFGRGY
VPAES...HDRYADLVGVIPVDAIFSPVLRVRYDIQSCRVGQRGDYDQLSLEVWTDGTVRPEDAIAEAAKIIKEHFTVFV
N............FDETALDLE....DEPEED........DPAVLE....LLNTKIADVDFSVRARNCLLTMGIKTLGEL
TRISEQTLANTRNVGKKSLSEIQGKLQE.YNLRLGMA
>SP|O51455|RPOA_BORBU/28-329
YGKFTIYPFERGFGITIGNTLRRVLLSSIEGYAITAMRVQSNNKDSSSKVVSSEFDLIPGVSEDTLEIIANIKNIH....
..LKLGEGEQR..KT....ISFSVSGKDTNVLKASH.......FERDGVEVFNKDLVIATLSHD.VNLDLEFQINYGRGY
VSSEQ...NSKYLEEVNVIALDSIFSPIEKVSYSVEDTRVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLFPLV
D............FED...NVN....TSFEKS........KSESSN....LLDMSIEKLNLSVRSLNCLAKENVRTLGEL
ISKNAEELSKARNFGKKSLEEIIEKLGS.YRLYLGMS
>SP|Q46449|RPOA_CHLTR/34-347
VARFVADPLEKGMGHTLGSALRRALLIGLEAPAIVSFSMTG.........VLHEYMAVEGIIEDVTNIVLNLKGSLLKKY
PLQDCEGGRCSQKLR....ATISIDASDLAAAGGQKEVTLGDLLQEGTFEAVNPEHVIFTVTRP.MQLEVMLRVAFGRGY
SPSER...IVLEERGMNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLVLQVETDGRVAPKEAVAFATQILSKHFSVFE
K............MDEKRIVFEEAISVEKENK.........DDILH....KLVLGINEIELSVRSTNCLSNANIETIGEL
VIMPEPRLLQFRNFGKKSLCEIKNKLKE.MKLELGMD
>SP|P00574|RPOA_ECOLI/23-317
HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG.........VLHEYSTKEGVQEDILEILLNLKGLA....
..VRVQGKDE...VI....LTLNKSGIGPVTAADIT........HDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGY
VPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFV
D............LR.DVRQPE..VKEEKPE............FDP....ILLRPVDDLELTVRSANCLKAEAIHYIGDL
VQRTEVELLKTPNLGKKSLTEIKDVLAS.RGLSLGMR
>SP|Q9A8S9|RPOA_CAUCR/26-318
KARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTAIQIDG.........VVHEFSSLEGVREDVVDIVLNIKQLA....
..VRMHAEGP...KR....MTLRATGPGPVTAGQIE........TPADIEILNPDHVLCTLDDG.ASVRMEFTVNNGKGY
VPADR...NRPEDAPIGLIAVDALYSPVKRVAYRVEPTRQGQSLDYDKLILEVETNGAVTPVDAVAYAARILQDQLQIFI
T............FE.EPKAKS..ADESKPEL..........PFNP....ALLKKVDELELSVRSANCLKNDNIVYIGDL
IQKTEAEMLRTPNFGRKSLNEIKEVLAG.MGLHLGMD
>SP|P72404|RPOA_STRCO/18-311
RSRFVIEPLEPGFGYTLGNSLRRTLLSSIPGAAVTSIRIDG.........VLHEFTTVPGVKEDVTDLILNIKQLV....
..VSSEHDEP...VV....MYLRKQGPGLVTAADIA........PPAGVEVHNPDLVLATLNGK.GKLEMELTVERGRGY
VSAVQ...NKQVGQEIGRIPVDSIYSPVLKVTYKVEATRVEQRTDFDKLIVDVETKQAMRPRDAMASAGKTLVELFGLAR
E............LNIDAEGID..MGPSPTDA..........ALAA....DLALPIEELELTVRSYNCLKREGIHSVGEL
VARSEADLLDIRNFGAKSIDEVKAKLAG.MGLALKDS
>SP|P20429|RPOA_BACSU/20-312
FGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVTSIQIDG.........VLHEFSTIEGVVEDVTTIILHIKKLA....
..LKIYSDEE...KT....LEIDVQGEGTVTAADIT........HDSDVEILNPDLHIATLGEN.ASFRVRLTAQRGRGY
TPADA...NKRDDQPIGVIPIDSIYTPVSRVSYQVENTRVGQVANYDKLTLDVWTDGSTGPKEAIALGSKILTEHLNIFV
G............LTDEAQHAE..IMVEKEED..........QKEK....VLEMTIEELDLSVRSYNCLKRAGINTVQEL
ANKTEEDMMKVRNLGRKSLEEVKAKLEE.LGLGLRK.
>SP|P73297|RPOA_SYNY3/20-310
YSKFSLEPLDRGQGTTVGNALRRVLLSNLPGAAVTAIRIAG.........VNHEFATILGVREDVLEIMLNMKELV....
..LKSYTDQPQ.......IGRLTAIGPGTVTAAQFE........VPSEVEVIDPNQYIATLAEG.AKLEMEFRVERGVGY
RVIER...GKDENSSLDFLQIDSVFMPVTKVNYTVEDIRADGMSPKDRLILDIWTNGSIQPREALSEASDIIANLFIPLK
D............LNELEAAHSDYQDEVNP.............ESQ.......IPIEELQLSVRAYNCLKRAQINSVADL
LEYSQEDLLEIKNFGLKSAEEVIEALQKRLGITLPHE