HMM Seed Alignment: TIGR01720
Download Alignment>OMNI|NTL03PA02402/1387-1542
DLGESLKAIKEQLRGVPDKGVGYGLLRYLA.GEEAATRLAALPQPRITFNYLGRFDRQFD.............GA.....
...........ALLVPATES..AG........AAQDPCAPLANWLSIEGQVYG...GE..LSLHWSFSREMFAEATVQRL
VDDYARELHALIEHCLDPRHRGVTPSDFPLAGLSQTQLDEL
>GP|17131742|dbj|BAB74348.1/1418-1574
NLEENLKYVKERLREIPQKGISYGLLRYLNPNQQISQTLQSLPQSAISFNYLGQLD.............LFTSQG.....
...........WILGLAKES..TG.......LSSHPLNQ.RRYVLNINAWIAQ...SQ..LQIQWRYSRNLHDTTTIENL
AQQFIKTLQAIIQHCQAPNSGGYTPSDFAGARLNQQQLDKF
>OMNI|NTL01ATA1173/2410-2562
TPDRLLLDVKDTLRRIPNNGVGFGVLKYLR.N...KAEHLDYGKPQLRFNYLGQMD.............AMFAID.....
...........SLFAPSGIT..SG........PMYGAANPRDTILEINAMVVR...GE..LQLQWVYGAQLHSEDTIRTL
ADHFRDNLETLIQHCLTGSGAGFSPSDFPLMDLGQDELDNL
>SP|P39846|PPS2_BACSU/2403-2553
RLGHLIKQTKDMLHRIPHKGAGYGVLKYIS.KRWGSQK.N...SPEISFNYLGQFD..............QDIQS.....
...........NAFEVSDIK..PG........NEISPNWERPYALDISGAVSS...GC..LNMHIIYNRFQFEEKTIQTF
SRHFKQTLENIIEHCTGKENQEWSASDFTDEDLTLDELSEI
>GP|6449056|gb|AAF08796.1/2664-2816
EISHYIKTAKEELRQIPHKGIGYGVLRYLS.GSTTP..LPAKMTPEISFNYLGQFD..............QDIQN.....
...........QAVQLSSYS..CG........SDSSGNQIRPYVLNINGMIVN...DR..LMVTISYSTKQYAKETIDQL
SAIIQNNLRTVIEHCVHKEQTELTPSDILLKGMAIDELDQL
>SP|P27206|SRF1_BACSU/3429-3583
DLGYQLKQMKEDIRHVPNKGVGYGILRYLT.APEHKEDVAFSIQPDVSFNYLGQFD..............EMSDA.....
...........GLFTRSELP..SG........QSLSPETRKPNALDVVGYIEN...GK..LTMSLAYHSLEFHEKTVQTF
SDSFKAHLLRIIEHCLSQDGTELTPSDLGDDDLTLDELDKL
>SP|P09095|TYCA_BACBR/917-1079
PLSDYIKLTKENMRKIPRKGIGYDILKHVT.LPENRGSLSFRVQPEVTFNYLGQFD..............ADMRT.....
...........ELFTRSPYS..GGNTLGADGKNNLSPESEVYTALNITGLIEG...GE..LVLTFSYSSEQYREESIQQL
SQSYQKHLLAIIAHCTEKKEVERTPSDFSVKGLQMEEMDDI
>SP|Q04747|SRF2_BACSU/3428-3577
DASAVIKTVKENLRRIPDKGVGYGILRYFT.ETAETKG....FTPEISFNYLGQFD..............SEVKT.....
...........DFFEPSAFD..MG........RQVSGESEALYALSFSGMIRN...GR..FVLSCSYNEKEFERATVEEE
MERFKENLLMLIRHCTEKEDKEFTPSDFSAEDLEMDEMGD.
>SP|P39845|PPS1_BACSU/2408-2553
QLAYRIKTTKDMLRRVPNKGTGYGLLTHIG.ELRHK.......EPEVSFNYLGQFS..............EEKEV.....
...........ETFQLSYYQ..PR........YEIAGEREREYELDINALITD...GR..LHVKAVYT.QVFSKHSIECF
MDRFHRHLIETIEHCSQKKAREKTLSDFSNKELTLSALSS.
>SP|P39847|PPS3_BACSU/2395-2548
ELGTSVKTVKDTLGRIPNKGVGYGMLKYLT.HPENKSI.TFSKTPEISFNYLGQFN..............DIERQ.....
...........DTFRPSSLG..SG........KDITHTWKREQIIEMSAMAAD...KK..LHFNLSYPPARFHRNTMEQL
INRIEHFLLDIMKHCAGQQKAEKTLSDFSSQSLTAEDLDSI
>SP|O68006|BACA_BACLI/4047-4197
EISQNIKMVKEALRKIPNKGIGYGVLKYMT.EELQKIQT....QAPLSFNYFGEMN..............NDMNR.....
...........KVFSQSPFS..PG........ESIGGKIVRHCAIEMNAISLN...GE..LTIYTTFNQDQYQTSTIEQL
NQSFKENLEKIVDHCVDKEGSDMTPSDYGDVSLGLEELELI
>SP|O68008|BACC_BACLI/4928-5079
DMSRTIKMVKEHLRNVPNKGIGYGILKYLT.RDSEIAKGA...ASPILFNYLGQLD..............EDINS.....
...........GEFSSSHLS..PG........EAAGKGITREHPLEINAVVFR...GK..LAIQTTYNTRAYSEDVVRAF
AQNYKEALKAVIRHCAEREETEKTPSDYGDKGISLDQLEEI
>GP|3421060|gb|AAC32048.1/1876-2025
ELAAAAKAVKEQLRAVPNRGLGYGVLRHLHG....A..LDGTP.PQILFNYLGRFTG.............GSGND.....
.............WRPVAGIGALT........EGVDP.SNPAMSLEINALAEERPDGT.VLSMTLAWPGGLLDADDVSEL
GSMWADVLVALTRCDALR...GHTPSDFGLVTVSQDDIDGW
>GP|5763943|emb|CAB53322.1/1036-1186
.LSAALKAVKEDLARVPDHGVSYGALRHLARV...A..FDAPA.PQVLFNYLGRFDA.............GSSGD.....
.............WQLASVNGQLG........EQRDPRMRLPRALEFNAIAEPDATGAYTLVTAISWPDGMFTDTDITTL
GAYYVEALTGLAALENG....GHSPSDFHPLPLTQADVDAL
>GP|2894189|emb|CAA11795.1/2854-3012
AAGRLLKQVKENVRAVPDGGLGYGMLRYLNAETGPV..LAALPKAEIGFNYLGRFSS.............RPDGE.....
..........AQPWQ..IKG.IVG........GAAEQDTPLRHVVEIDAVVLDGADGP.EFTLTVTWAGRIVGDAEAESF
ANAWLDMLSGLAAHVEAGGAGGHTPSDFPLTTLTQREVAEI
>GP|5869932|emb|CAB55600.1/4356-4514
ALGGIVKAVKEQLRSLP.EGLTYGLLRYLNPEVD....LGGSD.PTIGFNYLGRLGA............GAGELS.....
..........EELWRIDQDSLALSD.......AASAVPMPLMHTVELNAGTIDTDNGP.SLRASWTWAPSAFDEEQATRL
SRLWFEALAGICAHVR.GGGGGLTPSDVAPARLTQRQIDEL
>GP|2501965|gb|AAB96628.1/1588-1777
AVGRTVREIKECLRTLPDQGLGYGILRYLDPENGPA..LAQHPTPHFGFNYLGRVSVSADAASLDEGDAHADGLGGLVGG
RAAADSDEEQWADWVPVSGPFAVGA........GQDPVLPVAHAVEFNAITLDTPDGP.RLSVTWSWPTTLLSESRIREL
ARFWDEALEGLVAHARRPDAGGLTPSDLPLVALDHAELEAL