HMM Seed Alignment: TIGR01398
Download Alignment>SP|P35620|FLHA_BACSU/3-675
TRDLSVLISVVLIVAIVVIPFPPWLLSILIIINISLALIVLLTTMNMQEALQFSIFPSLLLLLTLFRLGLNVSTTRSILS
HGE.....GGKVVETFGNFVVG....GNVLVGLVVFIILIIIQFIVITKGAERVSEVAARFTLDAMPGKQMSIDADLNAG
MITEQEAKHRREKVAREADFYGAMDGASKFVKGDAIAGIIIVMINIIFGIVIGMLQQGMSIQEAASHFTMLTVGDGIVSQ
IPALLISTATGIVVTRAAS..EGNLGHDITGQLFAYPKLLYVAAATIMLLGIFTPIGILLTGPLAGLLAFGAYTLSKSG.
..........................KEKEEVDEILEEEAEVDELKSPESVVQLLHIDPIEFEFGYGLIPLADANQGGDL
LDRIVMIRRQLALELGLVIPVVRIRDNIALQPNEYRLKIKGNEVAKGELLLDHYLAMSPTPEDDLIEGIETVEPSFGLPA
KWISEAVKDEADMLGYTVVDPASVVSTHITEKIKQHAHELIGRQETKQLIDHLK........ESYPVLVEEVTP.NPLSV
GDIQKVLAKLLKEKVSIRNLVTIFETLADYGKLTT..DSDLLTEYTRQALAKQITAQFAKENEVLKVVTCSGRVEKAIAD
GVQQTEHGNYL..SLEPDISESIVRSVAKEAEQLSLRQE.....TAILLCSPPVRMYVKQLLERYFPDLPVLSYNELEAN
VEVQSIGVV
>PIR|C72319|C72319/3-676
NVDIIVSLMIVAIVLLMVLPVPDRMLDFFQILNITLSMIILFSTMYIRNALELSSFPTLLLVVTLFRLGLNVASTRLILL
EGPK...FQGRVIRTFGDFVVK....GDYVVGLIVFFILVIIQFIVITRGAERIAEVAARFTLDAMPGKQMSVDADLNSG
LITEEEARKRREDIRREADFYGAMDGASKFVRGDAIASIIIVFINIIGGLLIGMLRHGMSLAEAAQEYVILTVGDGLAAQ
IPALLVSTATGIIVSRAAS..KENLGKDLVTELSRETKVLLLTGGVLIFLGIFTPI.PFFSAILGGALIFLAVYTSRAV.
..........................PQEELAGPAPAERPGGPVLSTPEEVSEIIQSDTVEVEIGYGLIPLADPSQGGDL
LDRITSIRKQLAFELGLVVSPIRVRDSVLLKPNEYSIKIRGSEVARYELVPNRLLAINPGTAKEKIPGIPTREPAFNLEA
YWIEEWRKEEAQQKGYTVVDPPTVFATHLSEVLRRHADELLGFKELELLIEGLK........EKFPKLVEDLIP.DVLKP
AEIKKVLQRLLKEGVSIRNLPTIFETLLESAEKSK..DIDYLVESVRKALKRQIASMVRSEDGKIHAIVLERDLEQKLLE
SLKEIGEEREL..LLNPEVSRELMNKISNELGNLMKKGY.....QPVIVCSSRIRPYFSRYVMRTIPGVYVISYDEIPDD
YTLQIEGVV
>SP|O67265|FLHA_AQUAE/3-675
GKEFWIILAVVLILSAIIIPIPALLLDLLLTLSITFSLTVLLLTFFIKNPLEFSSFPSVLLLGTLLRLSLNIAAARRILL
HGHEGTHAAGKVIEAFGKLVAG....GDVVVGLIVFLIFIVINFIVITKGAERISEVAARFTLDALPGKQMSIDADLNAG
LITEEEAKRRRQELEKEANFYAAMDGASKFIRGDAIAALIILFLSLVGGLLIGIGIRGMDLASAVKTYTILSIGEGLASQ
VPALLLSTAAGVLTTKMSS..RENLGEAISEELTKQPRALLFSAGVLGFIGLIPGLPTLPFLAMS.AILAGAYYLVQQS.
..........................LKERELKELEKLAQEKTKEKEEEGEELIPQPEPITLEIGYALIPLVDESQGGQI
PKKIKNLRKQIAKEYGVIVPLIHIRDNLRLKPNEYRILIKGIEIDRYELMPGHYLAVNLGNAKGPIEGIETYDPAFKIKA
YWITEDKKEEAQKLGYMVVDAETVLITHLSEVIKRNLHELLTRNEVMELIEMLS........KKYPKVVKEIVP.EQVPI
SIIHRVLQNLLREGIPVNDLLTILETLADYIEQTK..DPDLLTEYVRQALSKRITRMYLT.NGTLYAIALSPKVEAKLVK
FLKENREDE.....FIDYVLNTLLPKIKNEIVKFAQYGA.....VPVLLTSGEVRRFVRKTIEPYLSELAVLSYNELEKQ
VNIKIIGIV
>OMNI|NT01MC3710/1-678
YSDLYMAVGVIVVMAVMIIPLPSELLDFFLSINIAIAIVILLTTIYIHKPLDFSSFPSVLLLATMFRLALNIATTRLILL
HGGEGESAAGEVIRAFGQFVVG....GNYVVGVIIFSILVIINFIVITKGAGRIAEVAARFTLDKMPGKQMAIDADLNSG
LITEDEARRRRSEIEQESEFFGAMDGASKFVRGDAIAGILITLINIVAGFIIGVAQLDLSAAQSAQIYTILTVGDGLVAQ
IPTLVISAGAGFLVTRASG..DANMADHVSQQMTAQPRVILMSAVVLGLLAIIPGMPTVAFGLLAIAMGSWSWYLFRRA.
..........................EQRDEAVQHKAMAEAEAEAEAEEPIESYLALDLLRLDVGYGLISLVDETQHGDL
LDKIRSIRRQFAQDMGFVVPPIHIKDNLQLKPGEYSYLVKGVEVGQGELRPGSYLAMEGGDVTGQIHGIATVEPAFGLPA
QWIASGERERAEMLGYTVVDASTVLATHITEMVHNHAHEMLTRQEVQNLLDLVS........KNQPKLVEELIP.NIVSL
GDVQKVLQGLLRERVSIRDMGTILETLADYGKIIK..QPQQLVELVRQSLSRSIVRRYLDDEGTLTALVLGPDAENLVAE
AIVSGDYGSYL..SLSPRSAQQLLTRVRSEVEKAATVVV.....QPVLITGSRVRPFVKQALEGVLPHLVVLSQNEIPAN
VSVSSLGSI
>PIR|A85801|A85801/19-689
WQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILM
EGHTGAAAAGKVVEAFGHFLVG....GNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAG
LIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINVVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQ
IPALVISTAAGVIVTRVST..DQDVGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGRE.
..........................QKAPAEPK..PVKMAENNAVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGEL
LGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNA
IWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVA........QEMPKLTEDLVP.GVVTL
TTLHKVLQNLLDEKVPIRDMRTILETLAEHAPIQS..DPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQ
AL.QGG....G..GLEPGLADRLLAQTQEALSRQEMLGA.....PPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDN
RHIRMTATI
>GB|AAD19733.1|4378865|AF124349/15-689
GRTAILPVAILVLVGLMVVPVPTAVLDIGFISNITISLAVLMVSLNAAKPLDFSSFPTVLLFATLLRLSLNVASTRVVLV
NGHTGANAAGMVIEIFGHFLIG....EHYVVGIFIFAILMIINLVVVTKGAGRVSEVSARFTLDAMPGKQMAIDADLNAG
LITPEEAKNRRQEVATEAGFYGSMDGASKFVKGDAVAGVLILLVNIIGGLILGVFSYNMTLSDAASNYVQLAIGDALVAQ
IPSFLLSFATASIVTRVTS..SFDLTGQIVSQFNS.ARAWTPVAVILGFLGIVPGMPHFVILP.AAGLSGWTAWKLHKS.
..........................AQAEAAKKEAPPPVVVPDTPPPVSWNDVSDGAVLSLEIGYGLIPLVDDRKKAPL
MARVTGIRRQLSRDLGFVIPLVRVRDNLSLGANSYRISVSGVVTGEDEVWPDQLMALNNGDADGTLVGRVSKDPTFGLNA
VWIPENRRSDAIVAGYTVVDAATVIATHLNQSIINNAADLFGMDDAQKLLDMLK........ETAPQLVSAVTP.QPLSL
AVITLICRSLLWEGVSLHEFRRIVEAMVDAVREET..EPNALLEAIRIRIGGIIVQSIVPVKMPLPVVTFEPKLEALLSQ
GV.RSGPQAAH..PFEPALANRIVTALESAAQPLLSNGQ.....RFAIVTSPVIRRPLARLLKPHFSEISVLSFLEIPDG
KPVEVVAVV
>SP|Q56338|FLHA_TREPA/10-693
TTDAFVAISVLVVVFSIVVPLPTQILDALMAFNLIFNLLILLMVLFVEKPTDFSVFPSLLLTSTVFGLGLNVSSTRLILT
LGDR...FSGYMIRAFSSFVVGGSGTQGLVIGFTVFIILIAVQAFVITKGATRIAEVAARFTLDFNATKSMSIDAEYNAG
VITEEEARERKRQIQREADFFGAMDGASKFVSGNVKIGIFITIVNVIAGLIVGVIFRREGFQAALQTYTNLTIGDGLLAQ
LPSLLLSVATGFIVTRSSD..QGSFGQNVQEQFSKSALVYFIGSGALIVMAVLPGFPHSILFFMAVCFAFVGLQLRKRER
VH........................VQEHEMQKSSDKKGMQQTQDSTSEMGPIVPLDPLSLELGYGLIPLVDKEKGAEL
LSRITVIRKDAALDLGLVAPKIRIIDNMRLDPSSYCFKIQGLEVARGKLRLGWFLAIKSGQVTEEVPGERTIDPTFGLPA
VWISEENRDRAERVGYTVVAPSAIIATHLTQVIRTNAADILGRQNVQMIIDALR........KEYPAVVDDVT..QKCPL
GKIQKVLQGLLREQVSIRNTVAIFETLADFASTSDTVPVPILIEKVRQRLGRQICLQYADEQNVLHVMRLDSSLETFLSE
KI.ALTVDSLS..ILTLSLDEQ..RQVLQAVRTVFVPTRQEGY.IPVLLTTDTIRSAMWNLFFSDRIEIAVMSYKEVSTD
MRIETVGVV
>GB|AAS10553.1|41815585/10-693
VPNALVAIGAIMVIFVIIIPLPTALLDFFMALNLIFSLIILLIVLFVDKPTEFTVFPSLLLVSTIFGLALNVSSTRLILT
YGEK...FNGKMIAAFSQFVIGSTGNQGLVIGFVVFIILIAVQAFVITKGATRIAEVAARFALDFNNTRSMSIEAEYNAG
VITEAEARKKKEELQRSTDFYGAMDGASKFVSGNVKIGIFITVLNIVAGLIVGIVFRQEEFTKAMQMYTRFTIGDGLLAQ
LPSLFISVATGLVVTRSAS..TGSFGKDITDQFARNSTVYYIAAITLTVMAVLPGFPSIILIIIALSLAFLGWRLQTTKV
TR........................AQKEQAAKEAQAASEKAAKTETDDTKAVSPYDDLSLQFGYGLIPLVDEKRGSDL
VPRVKRIRKEIALETGLVMPVIRMMDAMNLPPDEYCITIQGAEVARSKIRMGAYLAVNPGNVQDEIPGEPTLDPAFGLPA
IWISESNQAAAERAGYTVIDPPSIIATHLTQVIKTHADDILSRQMVSNILDSAK........KLNPIVVEEIQSNDKLTL
GDLQTVFKCLLRENVSIRNTTAILETISDYRRITG..DMYLIAEKVRQRLGRQIVQQYLGEDKALRAFMVDS...AFFQT
VL.ASRIDTLT..GPQPAIDTESKKAWLRAVQNAYNNFNAQFVGIAVILVPEEGRLLIKRLLEYEMPMVPVLSVPEIPKD
ISVIGMGNI
>SP|O06758|FLHA_HELPY/23-729
SKDLALVVFVIAILAIIIVPLPPFVLDFLLTISIALSVLIILIGLYIDKPTDFSAFPTLLLIVTLYRLALNVATTRMILT
QGYKGPSAVSDIITAFGEFSVS....GNYVIGAIIFSILVLVNLLVVTNGSTRVTEVRARFALDAMPGKQMAIDADLNSG
LIDDKEAKKRRAALSQEADFYGAMDGASKFVKGDAIASIIITLINIIGGFLVGVFQRDMSLSFSASTFTILTIGDGLVGQ
IPALIIATATGIVATRTTQNEEEDFASKLITQLTNKSKTLVIVGAILLLFATIPGLPTFSLAFVGTLFLFIAWLISREGK
DGLLTKLENYLSQKFGLDLSEKPHSSKIKPHTPTTRAKTQEELKREEEQAIDEVLKIEFLELALGYQLISLADMKQGGDL
LERIRGIRKKIASDYGFLMPQIRIRDNLQLPPTHYEIKLKGIVIGEGMVMPDKFLAMNTGFVNKEIEGIPTKEPAFGMDA
LWIETKNKEEAIIQGYTIIDPSTVIATHTSELVKKYAEDFITKDEVKSLLERLA........KDYPTIVEESK...KIPT
GAIRSVLQALLHEKIPIKDMLTILETITDIAPLVQN.DVNILTEQVRARLSRVITNAFKSEDGRLKFLTFSTDSEQFLLN
KLRENGTSKSL..LLNVGELQKLIEVVSEEAMKVLQKGIA....PVILIVEPNLRKALSNQMEQARIDVIVLSHAELDPN
SNFEALGTI
>PIR|A49217|A49217/24-720
AKSLTIVGFLVCILAIIIVPLPSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMILS
EGQNGPEAVSEIIAAFGEFVVG....GNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARFTLDAMPGKQMAIDADLNAG
LIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGIIITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQ
IPGLITSTATAIIITRASK.DEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLT.KQVK
EGKIDITTVKKSKPSAAVASQ....SGAGGTTAAPAKKSEEEILKEEEHKINDILKVEILELELGYGLIKLAEN....EL
TERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKGVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDA
LWIDANLKDEATLNGYIVIDPASVISTHMSELIKAHASELLTRQEVQNLLDKVK........NDYPIIVEGALG..VAPV
SLIQKILKDLLKHHIPIKDMLTILESVSDIAEVSK..SFDMIIEHVRASLARMITNMYLDDKGNLDIFILDSASSAVLME
NVQFRDGSYHL..PLSVAQTGTLVDTLRAEVAAVANGRIK....PFILCVEPQLRKFIADICYNFSINIVVLSFAEIAEN
TNFNTEGII
>GB|BAB49963.1|14023356/16-694
GRDIFFALGIVIILAVLFLPIPAFLIDIGLAFSIALSVLILMVALWIQRPLDFSSFPTVLLIATMLRLSLNIATTRMILS
HGNEGTHAAGYVIAGFSKLVMA....SDFVIGLIVFMILIVVNFIVITKGATRIAEVGARFTLDAIPGKQMSIDADLSAG
MIDDKTAQLRRRELEEESSFFGSMDGASKFVRGDAIAGLIITAINIIGGIAIGYIRHGMGMGEAADVFIKLSVGDGLVTQ
IPALIVSLAAGLLVSKGGT..RGSTNQAVFGQLGAHPRALYVAAALLVLLGLMPGLPLFPFFALAGGMAGLGYVIPMRA.
.........................NRVLAAAEALKTQEKATKAEEEKNSVKASLATAEIELLIGKQLSTRLLVS.HQEL
VFRMGKMRKKFAQQYGFVVPEVRVADDFAIPPKSYQIKVHGTVVAEYSMRVGEIMVLLGSRDVPEIPGEEIREPAFGMRA
YSVMETFAEDLKRENYTFADNMSVLLTHLSEVIRNNLPQLLSYKDMKALLERQD........QEYRKLADEICT.THISY
PGLQAVLKLLLAERVSIRNLHLIIEAIAEIAPHVR..RTEQIVEHVRIRMAQQICGDLS.EGGVLKVLRLGNRWDLAFHQ
SLKRDAKGEVREFDIDPRQLEEFGQDATKAIKKFLEAGE.....RFVLVTAPDARPYVRMIIERLFTTLPVLSHVEIAKG
VEIRVLGTI
>GB|AAN34292.1|23464511/44-722
GSDIGLAVGIIIILTVLFLPVPAVVLDIGLAFSIAFSVLILMVALWIQRPLDFSAFPTVLLIATMMRLSLNIATTRVILT
HGNEGYLAAGHVIHGFSQFVMG....GDFVIGLVVFAILIIVNFLVITKGATRIAEVGARFTLDAIPGKQMAIDADLSSG
LIDEKEAQRRRRELEEESSFFGSMDGASKFVRGDAIAGLIITAVNIFGGIVIGATRHGMDISQAADVFTKLSVGDGLVTQ
IPALIVSLAAGLLVSKGGT..RGSADQAIFGQLGAYPKALLIAALLLFILGVMPGLPAFPFFLLGGAMAFVGIAVPRRQ.
.........................ARQREADAAEAGKKQHEAEEQERNSVKASLETNQIELCLGKQLSARLIAS.QEEL
AHRVNKMRRKFAQEYGFVIPEIKVTDDIALPPKSYRIKIHGTAVASHELRVGEILVVLGERPVPSVPGEEVREPAFGMRA
YSVPETFTADLRREGYMTVDNLSVLLTHLSEIVRNNLAQLLSYKDMRILLDRLG........PEYRKLLEDICP.AHISY
SGLQAVLKLLLAERISIRNLHPILEAIAEIAPLVR..RPEMIVEHVRMRMAQQICGDLS.DNGVLNVLRLGNRWDLVFHQ
SLKRDAKGEIVEFDIDPRLLEQFGTEASAAIRKHFDNGE.....RFVLVSSPEARPYIRMIIERLFATLPVLSHVEIARG
VEVKSLGAI
>OMNI|SPO0170/11-693
SPTVLLAIALMAIIVMMILPMPAWVLDIGLAASFALAILIFTLTLFIERPLDFSAFPTILLASLMLRLSLNVSSTKLIIG
QGHTGPNAAGDVIEGFAQFVMG....GSVFLGLVVFGVLLIVNFMVITKGAARMAEVGARFALDGMPGKQLAIDSDMSAG
AIDHQEAKARRELEQQETTFFGSLDGASKFVKGDAIAGLLITLLNLVMGLIMGVVVHGMPMSAAFETYAILTVGDGLVSQ
IPAVIISIASALLLARGGT..QGATDNALFAQLGKHPAALATVALLMVLFALVPGLPFLPFISGGAVLGYAAWRMRLKQ.
.........................KQE.AESAARITEEQTPVARQG...IGDILDLDDVHLEFAPDLVGMALDP.GTGL
DARIANMRTHVASIYGLILPDIRLTDQAELPQGTYVIKVQGVEQVRGVLHPDLVLALMTDHPDALPAGEDVTEPVYGAPA
RWILPKDQEAAALSGATIVSPPEILATHLLEVIKQNFARLLTLKSLRRLLSEMTRLSDPVRSEANQKLLDELIP.DKVPI
DTLHAVLRLLLEERVSIRNMPLILEAVAEARLATT..QPEAICEHVRQRLGFQLVAEMKRADGSIPLVQLAPEWEDAFAT
.YQVDGAGGGLDIALPPDLFNKLADGVAKRLSQTAGQGI.....FAALVTSTRRRRFLRTILRARGIPNPVLSFEEIGME
ARPALVGQV
>SP|Q03845|FLHA_CAUCR/24-700
RGEMGLALGVVGIIVLLIIPVPAPLLDVLLAISLTGSVLILMTAILIKKPLEFTSFPTVLLVTTLFRLGLNIASTRLILS
HGQEGTGGAGAVIEAFGHLMMQ....GNFVIGVIVFIILIVVNFMVVTKGSGRIAEVAARFTLDSMPGKQMAIDADLSTG
LISQDEAKIRRKELEQESTFFGAMDGASKFVKGDAIAGLIITAINIIGGIIIGVVQHKMPFGDAASTYTIMTIGDGLVSQ
IPALIISIAAGMVVSKAGV..EGSADKALTTQLAMNPVGLGMVSASSGIIALIPGMPIFPFAAMALAAGALAYKRVQDA.
.........................KKPKALDPADLEAAAPSEPEEE..PISASLAIDDVKIELGYGLLTLINDLDGRKL
TDQIRALRKTLASEYGFVMPPVRILDNMRLANQGYAIRIKEMEAGAGEVRLGCLMCMDPRGGQVELPGEHVREPAFGLPA
TWIADDLREEATFRGYTVVDPATVLTTHLTEILKENMADLLSYAEVQKLLKELP........ETQKKLVDDLIP.GTVTA
TTVQRVLQSLLRERVSIRDLPQILEGVGEAAPHTA..SVTQLVEQVRARLARQLCWANRGDDGALPIITLSADWEQAFAE
ALIGP..GDDKQLALPPSRLQDFIRGVRDSFERAALAGE.....APVLLTSPGVRPYVRSIIERFRGQTVVMSQNEIHPR
ARLKTVGMV