HMM Seed Alignment: TIGR01386

Download Alignment

>OMNI|NTL03PA04887/4-460
RRSLTLYAALLFAAVAALVVSAVGFYLYRSVEEAMLRRSDVMVAGRVEHFRNLLRDN-LTLAE-LKAR-PRLFENMLGNE
QDILLLGQPGEAPIVAVNPRHERLPSLRVVAAGQALNPS-----------------VVHAALTHDGIPMRVLAAEVLVGG
REPLQITAAHLLLGETRMLAQYRDRVIAAVLLAFLGTALLGWLVLRHGLRPLRTLAAKAAEIHPTSLDTRLDVAAAPAEL
QQVAQSFNAMLERLDDGYQRLQQFSADLAHEIRTPIGSLMGHGQVALRQPRSNEEYQALIASNQEELERIARMVESILFL
ARADDVRAAVERSRLDLGEELR-RQAEYF-EGLAEERG--LSLDVQVS-GQLRADPQLFRRALSNLLANAIRYASADSLI
EVRGLRRSGEFLLSVENACDRLPAEPLSRLFDRFYRGDAARSD-AQS-SGLGLAIVQAIMRLHGGRAEASAPAPGRIRFD
LAFP
>OMNI|NTL03PA02810/8-439
RMSLGVRLSLLFAACTAAVSLIAGLIFSRAIDEHFVELDHMAMSAKLAVFRDELRGL-GSEQQM-RRREAELLREL-ARH
PDLGLRLNGPDGNLWFER-----LPQPAHPGLPANRELG---------------------------------APLEPGND
A-SPRLTVILDISHHQHFLQRMRQLIWLTMSLSALATALLGAWATGASLAPLRRMREVAARVSANSLTTRLDASRMPEEL
RGLAGELNAMLARLEEAFQRLSAFSADIAHELRTPLTSLLTQTQVVLSRPRSLEDYREALHGNLEELERLTAMVNDMLLL
AKADHGLLAPSRQALDLGAEVD-SLLEFY-QPLAEDRD--IRLLREGS-LSLPGDRGMLRRVLANLLDNALRFTADGGEI
RIRLGDR----RLSVENQGPAIPPERLPRLFDRFYRADPARREGQGEHAGLGLAICRSIVQAHGGEIRCES-ADGWTRFV
IDFA
>SP|Q44007|CZCS_ALCEU/9-452
PLSLTRRLGLFFALVLSIALASMGAFAYYSLAAQLEARDDEVVKGKLEQVEHFLREV--DGVQGVPAA-QHRFDDLVRGY
SDLIVRVTALDGRLLF--RTG---------NDALLEGTD------------------QAAVTGKSSLMFQSADAVLGRDG
T-RATVFVAKSGEDRKQVTARFRTTLVLGTTVGVILTALVGAAITRRELEPAHVLIKQINRISVERLSYRVDMPPKPTEV
RDIASAFNAMLQRLEDGYQKLSRFSADLAHDLRTPLNNLIGHAEVALSRDRTGPEYVALVEESLVEYQRLARMIDAMLFL
ARADSANVALELTELQLNAELR-KLSAYF-SVLAEERS--VVIRVSGD-ATLVADAILFQRAINNVLSNAVRHAWPNSMI
DLVVRRDR-HCCIDITNVGDPIPERELSLIFDRFFRGDRARSN-SSQSTGLGLAIVLSIMELHGGDASAVSGLDGKTRFT
LRFP
>SP|O31396|IRLS_BURPS/7-460
PRTLRARLTALIILSTAATLALSGVALYSALHNRLVGMSSYEMSATLAAMRTHLANV-ANVDDIP-RKSDLWIDQL-HGH
QNLDLAIYDTDGRLRFATRGF---VAPRPALGAPQTRVP------ASAAPAGAT-----------FSYLADDAPLRGGNP
R-TARIVVQYDGKNDHALLRAYAYTVVVIEVLAVVLTAALAYGIAMLGLSPLRRLVARAEQMSSSRLAQPLPELDTSGEL
KEMEHAFNAMLKRLDESFVRLSQFSSNLAHDMRTPLTNLLAEAQVALSKPRTADEYRDVIESSIDEYQRLSRMIEDMLFL
ARSDNAQSHLAIRTLDAAAQAE-RVAGYY-EPMAEDAE--VSIVVRGK-AEVRADALLYHRALSNLISNALNHAPRGSTI
TIECAQAADAATISVSDTGRGIEAPHRERIFERFYRVDPARHN-SASGTGLGLAIVRSIMENHGGTCGVDSEPHVRTTFW
LKFP
>GP|9947388|gb|AAG04827.1/10-460
GMSLSTRLAGMFAGAAVVIFALIGTMLYCILDRQTERLQQGEVDVRFNMVSRMLDHP--DLAERWPHL-QGKLDNLSQEY
ELIRFWIDSDDPRYHYGRFSEP-VQRLIADGAGRYELELP----------------------EHRYALTARVGVLPAREG
RPRLTYVTAIDSAAFHEARTSTLKWLLGLSALGVLLASLLGHWIARLGLWPVHRLSEEARRISPRQLSQRLQLSPLPAEL
RELVGAFNGALDRLEQAYVRLESFNADVAHELRTPLTNLIGQTQVALSRERSGEHYEEVLQSNLEELERLRAIVNDMLFL
ARADQGRLACEREETSLAGEIA-TTVDFL-EVIFDEAG--VGIEVRGE-ARALVERALFQRAVTNLLYNAAQHTAAGGTL
RVGVERRGDEVRVAVSNPGVPIADEHRRHLFERFYRVDAARSN-SEANHGLGLSIVKAVASMHGGSVFVDS-ADGWNTFG
FTVL
>OMNI|NTL03PA02524/4-467
PGRLSLRLALLVGALGALLALALGAMAHWNLGRELEARERENLQLKLEQIRHSLEDD-LDLRSDPAVQ-AHALQDQLVAH
SGLHLSILDSRSGQPL-MSFGDQAAASVAANRALLARLQADARQ-----------PVFQSWSTGNDQRLLSIGASMRMKN
GTPVQVLLSSERNADERLLDGFLRATLLALPFLLPLIALAAWWVVRAGLEPLNRFRRVAAQVSPQDLSYRIPEQNLPREL
DSLARSFNHMLGRLEDGVRQLSQFSDDLAHELRAPICNLLVRNQVLLSQHRDGAAYREALESNAEELERLSRIVTDMLFL
VQVDNPAIQAQFGCVALHEQAA-KVIDLY-EMVAEDKG--VELRLSGN-GFAHGDNLMIQRAISNLVSNAVRHTPQGGRI
DVRIGERAGHTEVRVSNDGPGIPPEYLPHLFERFYRRAGRQTG-AQAGTGLGLAIVQSIMAYHGGRAEAESVPQQKTHLR
LLFP
>SP|Q9ZHD4|SILS_SALTY/9-484
PFSLALRLTFFISLSTILAFIAFTWFMLHSVEKHFAEQDVSDLQQISTTLSRILQSP-ADPD---EKK-VSKIKESIASY
RNVALLLLNPRGEVLYSSAQGAALRPAVNSADFSEHSRARDVFLWTVEDTARAMDTGSGMKMETYRIIASSGQATFQGKQ
Q-NYVMLTGLSINFHLHYLDALKKNLIAIAVVISLLIVLIIRIAVRQGHLPLRNVSNAIKNITSENLDARLEPTRVPIEL
EQLVISFNHMIGKIEDVFTRQANFSADIAHEIRTPITNLVTQTEIALSQDRTQKELEDVLYSSLEEYNRMTKMVSDMLFL
AQADNNQLIPDRVRFDLQSQNSLKVFRVFSEALGPKETPILLLKFNGMPCLVEGDPQMFRRAINNLLSNALRYTPEGQAI
TVSIREQESFFDLVIENPGKPIPEEHLSRLFDRFYRVDPSRQR-KGEGSGIGLAIVKSIVEAHHGRVQVES-DVHSTRFI
LSVP
>SP|Q47457|PCOS_ECOLI/4-464
KISLTTRLSLIFSAVMLTVWWLSSFILISTLNDYFDNQDRDFLTGKLQLTEEFLKTETFRNKTDIKSL-SEKINDAMVGH
NGLFISIKNMENEKIVELYAKNSVVPAVLLNKSGDILDYMIQTE---------------ENNTVYRSISRRVAVTPEQGK
SKHVIITVATDTGYHTLLMDKLSTWLFWFNIGLVFISVFLGWLTTRIGLKPLREMTSLASSMTVHSLDQRLNPDLAPPEI
SETMQEFNNMFDRLEGAFRKLSDFSSDIAHELRTPVSNLMMQTQFALAKERDVSHYREILFANLEELKRLSRMTSDMLFL
ARSEHGLLRLDKHDVDLAAELN-ELRELF-EPLADETG--KTITVEGE-GVVAGDSDMLRRAFSNLLSNAIKYSPDNTCT
AIHLERDSDCVNVMITNTMSGQVPANLERLFDRFYRADSSRFY-NTEGAGLGLSITRSIIHAHGGELSAEQ-QGREIVFK
VRLL