HMM Seed Alignment: TIGR01074
Download Alignment>SP|P09980|REP_ECOLI/2-671
...RLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG
LMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIG
ERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFT
VVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSAN
NEEHEAERVTGELIAHHFVN..KTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNP
DDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAER.EPIAAV
RDLIHGMDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEP.MTLTQVVTRFTLRDMMERG..ESEEELDQV
QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLE
LPQDDLI...WEQERKVVSAEERMQKGQSHLANLKAMMAAKR...
>GP|6960284|gb|AAF33474.1/2-674
...RLNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARG
LMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKG
ERDRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFT
VVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSAN
NEEHEAERVTGELIAHHFVN..KTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNP
DDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLAER.EPVAAV
RDLIHGIDYESWLYETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEP.MTLTQVVTRFTLRDMMERG..ESEEELDQV
QLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLE
LPQDDLI...WEQERKVVSAEERMQKGQSHLANLKAMMAAKRAKS
>GP|9654570|gb|AAF93343.1/2-666
...KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERVAQTLGKGESRG
LMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKG
EQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLT
VVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILAN
NEDHEAERVIAEIIAHKFLN..RTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNP
DDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAV
RALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERG..EENDDSDAV
QLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDE
LPQDDIE...WEVKKKPVTQEERMAKGQAHIANLR..........
>SP|P44804|REP_HAEIN/2-669
...KLNPQQQQAVEYVTGPCLVLAGAGSGKTRVIINKIAHLIEKCGYSPKQIAAVTFTNKAAREMKERVAHSIGKEQSKG
LLVSTFHTLGFDILKREYKALGFKSNMTLFDEHDQFALLKELTADVLKEDKDLLRELISVISNWKNDLISPKQAFALARD
AKYQTFAKCYERYATQIRTYNALDFDDLIMLPTLLFKQNEEVRSKWQAKIRYLLVDEYQDTNTSQYELIKLLVGDRACFT
VVGDDDQSIYSWRGARPENMVRLRDDFPRLNVIKLEQNYRSTQRILHCANILIDNNEHVFDKKLFSTIGKGEKLLVIEAK
NEEHEAERIVAELIAHRFSR..KTKYKDYAILYRGNHQSRLLEKVLMQNRIPYKISGGTSFFSRAEIKDMMAYLRLVVNQ
DDDAAFLRIVNTPKREIGTATLQKLGELAQEKHISLFEAIFEFELIQRITPKAYDSLQKFGRWIVELNDEIQRSEPERAV
RSMLSAIHYEEYLYEYATSPKAAEMQSKNVATLFDWVADMLKGDETNEP.MNLNQVVTRLTLRDMLERG..EDDDDSDQV
QLMTLHASKGLEFPYVYLIGMEEGILPHQTSIDEDNVEEERRLAYVGITRAQKELTFSLCRERRQYGELVRPEPSRFLAE
LPNDDVL...WERDKPKLTTEQKQEKTQNQLDRLRAILK......
>OMNI|NMB1447/1-671
.MMKLNPQQLEAVRYLGGPLLVLAGAGSGKTGVITQKIKHLIVNVGYLPHTVAAITFTNKAAAEMQERVAKMLPKPQTRG
LTICTFHSLGMKILREEANHIGYKKNFSILDSTDSAKIIGELLGG...TGKEAVFKAQHQISLWKNDLKTPEDVVQTASN
IWEQQTARVYASYQETLQSYQAVDFDDLIRLPAVLLQQNSEVRNKWQRRLRYLLVDECQDTNTCQFTLMKLLTGAEGMFT
AVGDDDQSIYAWRGANMENLRKMQENYPQMKVIKLEQNYRSTARILKIANKVIENNPKLFTKKLWSQLGEGEPVKVVACQ
NEQHEADWVVSQIVKQKLIGGDKTQYADFAVLYRGKHQARIFEEALRGARIPYQLSGGQSFFDKAEIKDVLSYVRLLANP
NDDPAFLRAVTTPKRGIGDVTLGKLNTYAHEHECSLYEAAQNEEALATLNNTNRQHLQTFMDMFVSYLAKAETSEAGEFI
NSLLEEIDYENHLMQNEEGKAG.EIKWRNVGDLVSWFAR...KGGEDGK..NIIELAQTVALMTLLEGK...DEEETDAV
SLSTLHAAKGLEYPYVFLVGCEEGVLPHNDSIEEGNVEEERRLMYVGITRAKRQLTLTHCVKRKKQGTWQFPEPSRFIDE
MPQEDLKILGRKGGEPIVSKEEGRRNLADIIGRLDNLKKSGAAD.
>GP|9107919|gb|AAF85477.1/22-680
LMHGLNSPQRAAVLYREGPLLVLAGAGSGKTHVIVEKIAYLITSDCYPAKRIAAITFTNKSAKEMRERVAKQIKSSRADG
LTICTFHALGLKFLQIEHDAVGLKPGFSVFDADDADAQINDLLHG...AKQDVIDDTKRRISRAKNAGLSPEQALAAART
TREMEVATLYARYQARLIAFNAVDFDDLIRLPVQILETSDQVAMAWRERIGYLLVDECQDTNDAQYRLLKVLASPRGNFT
CVGDDDQSIYAWRGANAENLLQLERDYPQLKVIKLEQNYRCPNRVLRAANALIAHNPHAHLKTLWSDQKDGERIRIWECR
DSEHEAEKIAGEIS..YLGDAKQVPWSDFCILFRGNFQSRPLEKALQLLRIPYHLTGGTAFLERQEVKNLLSWLRLLVNP
DDDAAFLRAVQSPKREVGSTSLAKLAELAAAKQMPMSRAAESLGALQQLPARAANGLNKFTDILRELRQQVSRVSAAELV
RRLAEVSGLLTELREQSNDEASYQRRKRNVEELAEWFE.....GGPFGA..SVGDLVSQLALLSRND.....KDDGGNQV
RMMTLHASKGLEFRYVFIAGCEDGVLPHEVSLEEGNVQEERRLLYVGITRAKEQLWMSYSKCARRFGERVRFKPSRFFDE
LPAEELQ...RDGADPVVDAERKQERAKAGLAAIQALLD......
>GP|9951611|gb|AAG08681.1/1-668
.MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREMKERVGTLLRGGEGKG
LTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQKEY.SGDDGVDEIKNYIGAWKNDLILPEEALEKARN
PKEQTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQEHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFT
VVGDDDQSIYAWRGARPENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFEKQLWSEMGHGDPIRVIRCR
NEDAEAERIAMEIL..TLHLRTERPYSEFAILYRGNHQAKLMELKLQHHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNP
DDDNAFLRVINVPRREIGSATLEKLGNYATQRKISMYAACDEMGLAEHLDSRFHERLQRFKRWMDGIRRQCAENEPIAVL
RSMVMDIDYENWLRQNASSDKVAEFRMSNVWFLIEALKNTLERDEEGDM..TIEQAIAKLVLRDMLERQQ.EEEEGAEGV
QMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDE
LPPEDLE...WEGMEDAP.QEVKAAKGNAALADIRAMLK......
>SP|O51889|REP_BUCAP/2-656
...SLNFNQKNAIELINGPCLILAGAGSGKTKVIINKIIYLINNCQYKPGNIIAVTFTNKAAHEIKVRLAKHLNLLQIKK
MIISTFHSLGLEIIKKEINTLKFNSNFSLFDERDQMMLLKKICSKSIKNDTKLLKKLVFMISFWKNKFLTPLQVQLSAQS
NLEKDFAFFYKQYTFHLRKSNILDFDDLICIPTSLLKNNQIIQNRWQKKISYLLVDEYQDTNNSQYELIKMLTNVNSNFT
LVGDDDQSIYSWRGAKPQNLFLIKKDFPNLKIIKMEQNYRSYGRILKAANKLISNNLHYFKKKLFSNLEYGNKIKVIIGK
NEKNEAEKIADKIIHECSND..IMQYKDYAILYRGNYQSQILEKTFLKKNIPYDISTNSSFFSRPEIKDLLSYLRLIVNP
DDNHAFIRILNIPHRQIGLTTLNKLEELASKKNKSLFQISNDIEIKKILRERTVKKIKDFIYWIKKIIKLSLLKED.IIL
DKIINDIKYELWLTKILKEPKKIKTSINNIYTLSNWLKEMLRGNEFEKP.MNLLQIVKKMTLRDILEKKIQINEIPKNRV
QLMTLHSSKGLEFSSVFIIGMNEGILPNIKSINNDNIEEERRLTYVGMTRARKELFFTYCQTRIQYGQKLYTAPSRFLFE
LPQEDLQ...WEKDDYLDAFHTKEK....................