HMM Seed Alignment: TIGR01056
Download Alignment>SP|P14294|TOP3_ECOLI/1-653
..MRLFIAEKPSLARAIADVLPKPHRKGDGFIEC.....GNGQVVTWCIGHLLEQAQPDAYDSRYAR.WNLADLPIVPEK
WQLQPRPSVTKQLNVIKRFLH..EASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLR
SNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVT
PADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQP.AIVTSYNDKRESESAPLPFSLSALQIEAAKRFGLSA
QNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPDLLP..QPVVDPDIRNRCWDDKKVDAHHAIIPT
ARSSAIN.LTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDG...TP
LPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ..DKDLKKILRATDGLGTEATRAGIIELLFKRGFL
TKKGRYIHSTDAGKALFHSLP.EMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAP
G...........................SGGSADKKKAAPRKRSAKKSPPADEVGSGAIA....................
.....................................
>GP|6513858|gb|AAF14809.1/1-664
..MRLVLCEKPSQGRDIAKFLGATQR.GEGFLN......GPGVTVTWARGHLLETAEPEVYGEQYGKPWRTDVLPLLPQQ
WKLVVKADAKAQFAVINRLLK..QVDEVVIATDADREGEVIARELLDYCKFQG....RVFRLWMSALDDASIRSALADLW
PSSRTESLYYAGVGRSRADWLIGMNLTRLFTLLGREAGIGNVLSVGRVQTPTLAIVVKRDREIDNFVSKPYFEVIATMAV
NG.VLFPSKWVP...AAQYCDEEKRCIQSGVAAQVVQLCRQTPTAAIINCQIERKKQSAPLAFSLSTLQQACSRHWGMPA
QTVLDIAQKLYETHKLTTYPRTDCGYLPLSMREEIPQVLSAVVGTDPALQPV.VASLDTQFVSRIWNDKKITAHHGIIPT
KHTGDLSKLSDAERNVYQLVRLHYLAQFLPQMEIDVTEATFNIGGQLFRTRGNVLVKPGWKSLFGKMSEDDEDNTG.ETT
LPAMQAGQVCQVQGAEQKVLQTKPPAPYNDGTLIAAMTNAAAFVT..DAALKKVLKENAGIGTEATRAGIIDTLLKRGFL
VREKKTLKSTPLGRNLVDVLP.GTLTNPGLTALWEQMLDEVAAGRVSLDDFMAKQSQWVSQLVAQGRSQPLTMQAPPSPP
CPV........................CGGKTLQRNGKSGLFWGCLKYPECKGIVNNGNKGPRGRRRKPSPA........
.....................................
>OMNI|NTL01BS0426/1-727
MSKTVVLAEKPSVGRDLARVLKCHKK.GNGYLE......GDQYIVTWALGHLVTLADPEGYGKEFQS.WRLEDLPIIPEP
LKLVVIKKTGKQFNAVKSQLTRKDVNQIVIATDAGREGELVARWIIEKANVRK....PIKRLWISSVTDKAIKEGFQKLR
SGKEYENLYHSAVARAEADWIVGINATRALTTK.....FNAQLSCGRVQTPTLAMIAKREADIQAFTPVPYYGIRAAVDG
.....MTLTWQD......KKSKQTRTFNQDVTSRLLKNLQGKQ.AVVAELKKTAKKSFAPALYDLTELQRDAHKRFGFSA
KETLSVLQKLYEQHKLVTYPRTDSRFLSSDIVPTLKDRLEGMEVKPYAQYVSQIKKRGIKSHKGYVNDAKVSDHHAIIPT
EEPLVLSSLSDKERKLYDLIAKRFLAVLMPAFEYEETKVIAEIGGETFTAKGKTVQSQGWKAVYDMAEEDDEQEDDRDQT
LPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAMENPSAFMQGEEKGLVKTLGETGGLGTVATRADIIEKLFNSFLI
EKKGQDIFITSKGKQLLQLVP.EDLKSPALTAEWEQKLSAIAAGKLKSAVFIKDMKAYAHQTVKEIKNSSQTFRHDNITG
TACPECGKMMLKVNGKRGTMLVCQDRECGSRKTIARKTNARCPNCHKRMELRGQGEGQTFACVCGHREKLSVFEKRKNKD
KARATKRDVSSYMKKQNKDEPINNALAEQLKKLGLDK
>GP|3676443|gb|AAC61961.1/1-700
.MNTLILCEKPSQAMDLSTVFAKKKK.QNGYMEISDEQLNVSGFLTWAVGHLVELKEPQEYDEKYKN.FSTYPILLEKDD
FQFKVSDKTKDQFNNIKKIFKENKIDEVIIATDPAREGENIAYKILNQLKVTD..KVTIKRLWLTSKVESSIRKAFKNIL
PKEKTYGFYKEGRARELSDWLVGINLSRHFTKISRELGNDGVIHIGRVSSPTLNMVYNRENNIKGFKGKKFYKVSATINK
DE.QEVKTELKN.......KFDSEDELHEFLFENDITDLTQKG..LVTDIEKEIGYTMPPKFYDLSALQEDMNDKYKISA
KRTLEIAQTLYEK.KLITYPRTDSRYITEDEKEMLLENIDYLKEITKINLN......NELTNNSLINPSKIEDHYAILIT
GNDFNKVDLKEEEINVYKSILQNVAMNFMDKEQYETTTIEIAVKKLMFEVKGKIIQDNGFKALLNKQKTSEET.......
IPNFEKNEEVDIE.LDLLEKETTPPKRYTEKTLLKAMANPIETLE..DEGLKSTLKEVKGLGTPATRADIIENLKKNKYI
QVQKNKIYITKNGILACLLLEGHLLSKPDLTGQWEKYLNGISKGEKDDDSFINTINEMIKKTINEEVKNKESIQKVAKEK
VS.........................TNNIAKCPACDNGYLIDRKGFYGCTEYNNGCEFTIPKKLLEKSIPPTVVKALC
ESKTTKKLKGFKSKKSGKSFDCKLILTKENKLQFSFD