HMM Seed Alignment: TIGR01051
Download Alignment>SP|O83409|TOP1_TREPA/19-624
LVIVESPAKAQTIEKYLG.TQYVVRASMGHVIDLPKS.............................RLAIDIEHD..FQP
EYITVRGRAQCLKELRTLSKQSLQVFLASDRDREGEAIAYHLAQSIQAYCDTP....IKRIVFNEITPHAIRAAIGHPVP
IDTAKVNAQKARRVLDRLVGYHLCPLLWHKVKNGLSAGRVQSVALRLICEREVEVKRFVPEEYWTVEG.TFEKD......
KKSFSALLILIQGKKAVFKS...................KQEATSAIGLFSQSEARVSQIRSFEKNVRPKQPFTTSTLQQ
CAANRLGFTSRKTMQVAQQLYEGVSLG.THRVGLITYMRTDSVRVSEAAVKEVRAWIATHFSDALPGTPN...RYAAKGK
.SQDAHEAIRPT.YVAHTPERIKAHLTR...DQIRLYTLIWERFVASQMTDARVRSLTFEITA..G........PAVFSA
TETQVIEQGFYRVLKMLSPKDL......SKAVLPPTKEGEVVALHNVQSVQHFTQGPVRYTDASIVKMLEEKGIGRPSTY
APTISVLLDRYYVTRIQKQLMPTPLGKVISDLLTTYFHDVVDVSFTARMESKLDEVEEDKIKWNCVIADFYPAFSEKVST
......VMKD..LNSMRGVFD...EKTDVVCSQCGD.TMVKKLGRFG..FFLACG.....KFP...ECRNTQPVP
>SP|P46799|TOP1_THEMA/8-587
YIVVESPAKAKTIKSILG.NEYEVFASMGHIIDLPKS.............................KFGVDLEKD..FEP
EFAVIKGKEKVVEKLKDLAKK.GELLIASDMDREGEAIAWHIARVTNTLGRK......NRIVFSEITPRVIREAVKNPRE
IDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRIT.............
.VNFDGLTAEIDVKEKKF......................FDAETLKEIQSIDELVVEEKKVSVKKFAPPEPFKTSTLQQ
EAYSKLGFSVSKTMMIAQQLYEGVETK.DGHIAFITYMRTDSTRVSDYAKEEARNLITEVFGEEYVGSKR..ERRKSNAK
.IQDAHEAIRPT.NVFMTPEEAGKYLNS...DQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDG........KYRFKG
TVLKKIFDGYEKVWKTER..........NTGEFP.FEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEMERLGIGRPSTY
ASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFD.
.............RNDRIVVD...FPTNQKCS.CGK.EMRLSFGKYG..FYLKC............ECGKTRSVK
>SP|P39814|TOP1_BACSU/5-612
LVIVESPAKAKTIERYLG.KKYKVKASMGHVRDLPKS.............................QMGVDIEQN..FEP
KYITIRGKGPVLKELKTAAKKAKKVYLAADPDREGEAIAWHLAHSLDLDLNS.....DCRVVFNEITKDAIKESFKHPRM
INMDLVDAQQARRILDRLVGYKISPILWKKVKKGLSAGRVQSVALRLIIDREKEINDFKPEEYWTIDG.TFLKG......
QETFEASFFGKNGKKLPLNS...................EADVKEILSQLKGNQYTVEKVTKKERKRNPALPFTTSTLQQ
EAARKLNFRAKKTMMIAQQLYEGIDLGREGTVGLITYMRTDSTRISNTAVDEAAAFIDQTYGKEFLGGKR..KPAKKNEN
.AQDAHEAIRPT.SVLRKPSELKAVLGR...DQMRLYKLIWERFVASQMAPAVLDTMSVDLTN..N........GLTFRA
NGSKVKFSGFMKVYVEGKDDQME....EKDRMLPDLQEGDTVLSKDIEPEQHFTQPPPRYTEARLVKTLEERGIGRPSTY
APTLDTIQRRGYVALDNKRFVPTELGQIVLDLIMEFFPEIINVEFTAKMERDLDHVEEGNTEWVKIIDNFYTDFEKRVKK
......AES...EMKEVEIEP...EYAGEDCELCSS.PMVYKMGRYG..KFLACS.....NFP...DCRNTKPIV
>SP|P06612|TOP1_ECOLI/5-637
LVIVESPAKAKTINKYLG.SDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHN..WEA
HYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDAR.....YSRVVFNEITKNAIRQAFNKPGE
LNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTTPS......
GEALALQVTHQNDKPFRPVN...................KEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQ
AASTRLGFGVKKTMMMAQRLYE.........AGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPESP..NQYASKEN
.SQEAHEAIRPS.DVNVMAESLKD.MEA...DAQKLYQLIWRQFVACQMTPAKYDSTTLTVGA..G........DFRLKA
RGRILRFDGWTKVMPALRKGD.......EDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTY
ASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDHFFSDFTQQLDK
......AEKDPEEGGMRPNQM...VLTSIDCPTCGR.KMGIRTASTG..VFLGCSG...YALPPKERCKTTINLV
>OMNI|DR1374/48-701
LVIVESPAKAKTIEKYLG.QGYAVESSVGHIRDLPRSAADIPEKYKG...........QA....WARLGLDVEHD..FQP
LYVVSPEKKQKVAQLRKLAAEADEIILATDDDREGESIAWHLYQELKPKVPV......KRMVFHEITREAIQAAIAAPRQ
IDRNLVEAQEARRAVDRLYGYEVSPVLWRKVAPKLSAGRVQSVATRMLVERERERMRFVAATWWDVVVTAQALT..AQAG
EQTFPARLTEVQGERLAAGKDFDPLTGQLRPGAGVRLLGEAEALAISEGLKGQTLKVLTAEEKPFTSRPPAPFITSTLQQ
EGSRKLRMSAQTTMRTAQRLYEG.........GYITYMRTDSTNLSSEAVNAARGQVKDMYGAPYLSPQP..RVYAKKSK
NAQEAHEAIRPAGSTFRTPEQLRGELSG...DEWRLYDLIWKRTVASQMSDARGRSLRVRLGGQTASGQTADSVPVVLNA
SGRTIDFPGFLRAYVEGSDDPAA.ALEDRDTPLPPLKXGDAVRAQDVKAEDHETQPPARYTEASLVQALEGAGIGRPSTY
ASILGTIQDRGYALKKGTALVPSWTAFATSALLEHHFGTLVDYDFTAKMEEDLDEIAGGREHRVPYLRRFYLGEEG....
...EGMALKPLIERQMGEIDARGIATIKVP.KLEGS.GIEVRVGRYG..PYMQR......GE...DKANLPEGMT
>SP|Q59567|TOP1_MYCTU/20-689
LVIVESPTKARKLASYLG.SGYIVESSRGHIRDLPRAASDVPAKYKS...........QP....WARLGVNVDAD..FEP
LYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPRIPV......KRMVFHEITEPAIRAAAEHPRD
LDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAA
PPTFSARLTAVAGRRVATGRDFDSLG.TLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTLQQ
EASRKLRFSAERTMSIAQRLYEN.........GYITYMRTDSTTLSESAINAARTQARQLYGDEYVAPAP..RQYTRKVK
NAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRLYELIWQRTVASQMADARGMTLSLRITGMSG......HQEVVFSA
TGRTLTFPGFLKAYVETVDELVGGEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTY
SSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVPD
SVARSGGLKKLVGINLEGIDAREVNSIKLFDDTHGR.PIYVRVGKNG..PYLERLVAGDTGEPTPQRANLSDSIT
>SP|P73810|TOP1_SYNY3/4-637
LVIVESPTKARTIRNYLP.QDYRVEASMGHVRDLPASAEEVPAAYKD...........KS....WANLGVNVEDH..FSP
LYVIPKSKKKVVKELQTALKNADEVILATDEDREGESISWHLLQLLQPKVPI......KRMVFHEITQEAIRSALENCRD
IDENLVHAQETRRILDRLVGYTLSPLLWKKIAWGLSAGRVQSVAVRLIVQRERARRAFKTAGYWDLKAELEQNK...NP.
...FQAKLMTLGGTKLANGSDFDPNTGALLPDKQVVVLDEAQAIALKERLTGKPWAVVNTEEKPGVRKPSPPFTTSTLQQ
EANRKLGISARDTMRVAQKLYEE.........GYITYMRTDSVHLSDQAVTAARNCVQQMYGKEYLSPQP..KQYTTKSK
GAQEAHEAIRPAGTEFRIPNQTG..LKD...RELALYELIWKRTVACQMADARITQLSVLLKVEDA..........EFRA
AGKRIDFPGYFRAYVEGSDDPDA.ALENQEVILPPLKVGDRPNCREIDTVGHETQPPARYTEASLVKTLESEGVGRPSTY
ASIIGTIIDRGYVQMRSKALTPTFTAFAVVSLLESHFPDLVDTGFTSRMEQKLDEIAIGKTQWLPYLQGFFLGESG....
.......LENQVKVRQDQIDP....AIAKAIELENL.AAKVKIGKFG..PYIEIP...Q.GE.EIITASIPQDLT
>SP|Q9ZDK2|TOP1_RICPR/3-634
LVIVESPAKAKTINKYLG.DEFKVIASFGHIRDLPSK.............................KGSVLPDKN..FLM
EYDISDKAGKYVDAIVKEARKAEVVYLATDPDREGESISWHVAEVIKEKNKVESDDFFKRVAFNEITKKAIMNAVANPRK
LDTNLVNAQQARRALDYLVGFTLSPLLWRKLPGCKSAGRVQSVALRLICDREDEIERFKSEEYWDISLKMQNSN......
NDLFTAKLTHVNDQKLKKFS................IINEKEAKDLTQKLKLQKFYVEKIEKKQQKRQPQPPFITSSLQQ
EAARKLGFSAKKTMQIAQKLYEGVDIG.KETIGLITYMRTDGVTLSNDAIADIRKLIDKNYGNQYLPIKP..RIYQSKVK
NAQEAHEAIRPT.NITYTPDSLKQKLEK...DYYKLYELIWHRTIACQMENVIMDLVIANLASENK........EYLAKA
NGSIIAFDGFYKVYRESLDDEDE....EDNKMLPPLKEQEHIKTKEVIPNKHFTEPPPRYSEASLVKKLEELGIGRPSTY
ASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGFFKKYVEYDFTAGLENELDEIAAGKLEWKTALNNFWRGFNHNIES
VNEQKITEIINYLQKALDYHLFGEDKESKVCPSCKTGQLSLKLGKFG..AFLACS.....NYP...ECTFKKSIV
>SP|P55991|TOP1_HELPY/4-605
LIIVESPAKAKTIKNFLD.KNYEVIASKGHVRDLSKF.............................ALGIKIDETG.FTP
NYVVDKDHKELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLES.....YPRIVFHEITQNAILNALKTPRK
IDMSKVNAQQARRFLDRIVGFKLSSLIASKITKGLSAGRVQSAALKLVIDKEREIKAFKPLTYFTLDAYFES........
..HLEAQLISYKGNKLKAQELID................EKKAQEIKNELEKESYAISSIVKKSKKSPTPPPFMTSTLQQ
SASSLLGFSPTKTMSIAQKLYEGVATP.QGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKA..KVYSSKNK
NAQEAHEAIRPT.SIILEPNALKDYLKP...EELRLYTLIYKRFLASQMQDALFESQSVVVACEKG..........EFKA
SGRKLLFDGYYKILGN..DD........KDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTY
APTISLLQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEA
.............GKKNIISQKVHEKTGQSCPKCGG.ELVKKNSRYG..EFIACN.....NYP...KCKYVKQTE
>SP|P47368|TOP1_MYCGE/5-653
LVVIESPNKVKTLKQYLPSDEFEIVSTVGHIREMVYKNFGFDEN...................TYTPIWEDWTKNKQKNP
KQKHLLSKFEIIKSIKAKASDAQNIFLASDPDREGEAISWHVYDLLDQKDKAK....CKRITFNEITKKAVVDALKQPRN
IDLNWVESQFARQILDRMIGFRLSRLLN.SYLQAKSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLNKENNQKVVC
ANKSIPLVLREINPELSASLKLDFEAAENVSG..IDFLNEASATRFANQLTGEYEVYFIDEPKIYYSSPNPVYTTASLQK
DAINKLGWSSKKVTMVAQRLYEGISVN.GKQTALISYPRTDSIRISNQFQSECEKYIEKEFGSHYLADKNKLKRHKKDEK
IIQDAHEGIHPT.YITITPNDLKNGVKR...DEFLLYRLIWIRTVASLMADAKTSRTIVRFINQKN..........KFYT
SSKSLLFDGYQRLYEEIKPNTKD....ELYIDLSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTY
NTMASVNLERGYANLVNRFFYITELGEKVNNELSKHFGNVINKEFTKKMEKSLDEIAENKVNYQEFLKQFWTNFKSDVK.
...........LAENSIQKVKKEKELVERDCPKCNQ.PLVYRYTKRGNEKFVGCS.....DFP...KCKYSEFSN