HMM Seed Alignment: TIGR00916
Download Alignment>SP|O33518|SECF_RHOCA/128-298
LTA.......................VD..PA.............LKITSFESVG.........................
..............................PKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFALGAVVALVHD..VLL
.TVGLFAVLQ.LKFDLTTVAALLTITGYSINDTVVVFDRLRENLI...KYKTMPLRDVMNLSVNETLSRTVMTGMTTLLA
LVPMLIWGGDVI.....RGFVFAMVWGVFTGTYSSV
>SP|O33568|SECF_RHOSH/122-292
LKT.......................VD..PS.............ITFPSVESVG.........................
..............................PKVSGELIRSAILAVAAACAGIAVYIWLRFEWQFALGSVAALIHD..VLV
.TIGVFALFQ.IKFDLTTVAALLTVLGYSINDTVVVFDRLRENLV...KYKTMPLRDVMNLSVNETLSRTIMTLMTTLIA
LVSLLVFGGDVI.....RGFVFAITFGVVIGTYSSV
>SP|P19674|SECF_ECOLI/118-289
INES......................TN..QN.............AAVKRIEFVG.........................
..............................PSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHD..VII
.TLGILSLFH.IEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFR...KIRRGTPYEIFNVSLTQTLHRTLITSGTTLMV
ILMLYLFGGPVL.....EGFSLTMLIGVSIGTASSI
>SP|P44590|SECF_HAEIN/125-295
LQN.......................VD..KD.............IQIRSIEFVG.........................
..............................PNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIASLAHD..VII
.TLGVFSALQ.IEIDLTFVAAILSVVGYSINDSIVVFDRVRENFR...KIRRLDTIDIIDISLTQTLSRTIITSVTTLVV
VMALFFFGGPSI.....HNFSLALLVGIGFGTYSSI
>SP|O67536|SECF_AQUAE/97-266
LKK.......................FG..KY.............ELIRKETISG.........................
...............................VVSEELQKKAVFAILTALGGILLYLGVRFQPVWGFGAILALAHD..VIT
.VLGAYSITQ.REVNLEVVSAILVVAGYSVADTVVIFDRIRENLR...KKKGFTLEEIMDLSINQTLSRTIMTSLTTLVT
ALTLFILGGYAL.....SNIMFAFVVGVVVGTYSSV
>SP|Q9ZE34|SECF_RICPR/115-286
LRNN......................FP..YN.............FEYRKVDFVG.........................
..............................PQVGRQLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFGILIALVHD..VIL
.ALGFMSMTK.LDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLR...KYHKKNITEIINLSINETLSRTILTVITTLLA
NLALILFGGKAI.....HSFSVLVFFGIIAGTYSSI
>SP|O26073|SECF_HELPY/111-280
LK........................PS..GD.............FEIRKFDTVG.........................
..............................PRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHD..VIL
.VASSVIVFK.IDMNLEVIAALLTLIGYSINDTIIIFDRIREEML...SQKTKNATQAIDEAISSTLTRTLLTSLTVFFV
VLILCVFGSKII.....IGFSLPMLIGTIVGTYSSI
>SP|Q9ZJ65|SECF_HELPJ/111-280
LK........................PS..GD.............FEIRKFDTVG.........................
..............................PRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHD..VIL
.VASSVIVFK.IDMNLEVIAALLTLIGYSINDTIIIFDRIREEML...SQKTKNATQAIDEAISSTLTRTLLTSLTVFFV
VLILCVFGSKII.....IGFSLPMLIGTIVGTYSSI
>SP|O51597|SECF_BORBU/113-284
LK........................ET..FD.............ANIEVLDSY..........................
...........................FIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHD..IFF
.IVAFLGVFR.IEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVK...RLTDNTFLNVLNISISQTLSRTVLTSVTTFVA
VFSIYVFTEGSI.....KDFSLVFMVGVIVGTYSSV
>SP|O83426|SECF_TREPA/157-398
LRRVLKDVPSAVVQQVGV..RAE...HT..FQ.............VRVAAETAFPSSLL..PEQGGTALAQSDAPDLVTP
QGAVESVVYAALVRAYGADHVVRLAMDFVGSRFSHLLVRQALLLVLGALVLIFLYVALRFRWFFALGAIVALVHD..ACI
.MVSFMVWFG.LEFNSASIAAILTIIGYSINDTVVVFDRVRQTIL...LDPIASVTTVLDRSQTDMLTRTVVTTVTTLLA
ALMLYVFTEGGS.....RDFSLALMVGMVSGVYSTI
>SP|Q50635|SECF_MYCTU/160-342
FGPK.................G....TDGQPS.............KQAISDSAVS.........................
..............................ETWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFD..LTV
.TAGVYSLVG.FEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSLIGVLP
VLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSI
>GP|466825|gb|AAA17100.1/107-289
FGPK.................G....ADAKPS.............KQAISDAAVS.........................
..............................ETWGGQITKKVVIALVVFLVLVGLYITVRYERYMAISALTTMCFD..LTV
.TAGVYSLVG.FEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSLISVLP
VLALMVVAVWLLGVGTLKDLALVQLVGIIVGTYSSI
>SP|Q53956|SECF_STRCO/117-292
LD........................VS.................AEKINADLVG.........................
..............................PSWGDQIANKAWQGLGIFMVLVVIYLAIAFEWRMALAAFVALIHD..ITI
.TVGIYALVG.FEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTRDITKQTRWTYAEIANRSINSTLVRSINTTVVALLP
VAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSI
>SP|Q55611|SECF_SYNY3/112-288
LNEG......................IGKFDP..............ETIQIDTVG.........................
..............................PTVGKALFRSGVLALVISLLGIIIYLTIRFQLDYAVFAIIALLYDALITM
GAFAIFGLVGGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRETLER...HSDWDINHVVDDAVNQTLTRSINTSLTTSLP
LVAIFLFGGDSLK.....FFALALIIGFASGVYSSI
>SP|P19673|SECD_ECOLI/345-594
LDSAGGNIMSNFTKDNIG..KP...MATLFVEYKDSGKKDANGRAVLVKQEEVINIANI.QSRLGNSFRITG......IN
NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIAN...LIL
.IVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS.....NGRTVQQAIDEGYRGAFSSIFDANITTLIK
VIILYAVGTGAIK.....GFAITTGIGVATSMFTAI
>SP|Q9ZFF8|SECD_SALCH/345-594
LDSAGGNIMSNFTKDNIG..KP...MATLFVEYKDSGKKDANGRAVLVKQEEVINIANI.QSRLGNSFRITG......IS
NPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVAN...LVL
.IVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELS.....NGRTVQQAINEGYAGAFSSIFDANITTLIK
VIILYAVGTGAIK.....GFAITTGIGVATSMFTAI
>SP|P44591|SECD_HAEIN/346-595
LDSEGGEIMSQTTKKYYK..KP...MATLYVEYKDNGKKDENGKTILEKHEEVINVATI.QGRFGSNFQITG......VD
SIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKMFGVIASFALVIN...IVL
.LVGLMSILPGATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR.....NGRSIQQAINEGYNGAFTSIFDANLTTILT
AIILYAVGTGPIQ.....GFAITLSLGVAISMFTAI
>SP|O26074|SECD_HELPY/243-473
LDAQGAKIFGDFSGANVG..KR...MAIVLDN..............KVYSAPVIRER.....IGGGSGQISG......NF
SVAQASDLAIALRSGAMSAPIQVLEKRIIGPSLGKDSVKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVN...LFL
.IVAVMAIFG.ATLTLPGMAGIVLTVGIAVDANIIINERIREVLR.....ENEGIAKAIHLGYINASRAIFDSNITSLIA
SVLLYAYGTGAIK.....GFALTTGIGILASIITAI
>SP|Q9ZJ66|SECD_HELPJ/265-495
LDAQGAKIFGDFSGANVG..KR...MAIVLDN..............KVYSAPVIRER.....IGGGSGQISG......NF
SVAQASDLAIALRSGAMNAPIQVLEKRIVGPSLGKDSIKTSIIALVGGFILVMGFMALYYSMAGVIACMALVVN...LFL
.IVAVMAIFG.ATLTLPGMAGIVLTVGIAVDANIIINERIREVLR.....EGEGVVKAIHLGYINASRAIFDSNITSLIA
SVLLYAYGTGAIK.....GFALTTGIGILASIITAI
>SP|O67102|SECD_AQUAE/254-483
LKGEAAEKFGKFTEQNIG..KR...LAIVLDR..............KVVSAPVIRSK......ISDRGQITG......NF
TAQEARDLALILRTGSLPSPLKFLQEKIVGPSLGKDAIEQGIKAGILAIILLAVVLIARYKTAGITANISIFLN...VLF
.LLASMAFLG.ATLTLPGIAGIILNMGIAVDSNVLIFERVKEELR.....LGNTVSKAIELGFKRTLSAVWDTHVTLLVA
SVILFQFGSGPVK.....GFATTLALGTIASFISNV
>EGAD|162820|RP586/266-496
FNNLGSKIFGEITKNNTG..KR...LAIVLDN..............KLLSAPIINGA.....IIGGNGIITG......NF
TIESANELALLLRVGSLPTPLKIIEERSIGPNLGADSIESGKKAGLIGFVAVCIFMILSYGVIGLFANIALILA...LLY
.ILALLSLFQ.ATLTLPGIAGIILTIGMAVDANVLIYERIKEELH.....KGVSNLYAIRTGFESAFATIIDSNITTLIV
AFALYIFGVGAIK.....GFAVALTIGIISSMFSAI
>SP|O33517|SECD_RHOCA/303-533
FNVSGARAFGDYTAGHIG..EP...FAIVLDG..............KVISAPTIQAH.....IAGGSGIITG......RF
SIEEATDLALLLRAGALPAGMTFLEERTIGPELGADSVKAGMVASVIGFVAVVAYMIASYGLFGFFSSVALFIN...IAF
.IFAVMGAIG.GTMTLPGIAGIVLTIGTSVDANVLIYERMREEIR.....SGKSPVRAIELGFDKAMSAIIDANVTSFLS
SAILFVLGAGPVR.....GFAVTTMIGIAASIFTAI
>SP|Q9ZG86|SECD_BRUAB/190-420
LDDNGRRRLADLTAQGNEN.....SFAIVVDN..............QVVSAPTVSG.....PLDTSELQIEG......AF
DLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVN....IV
ILTAVLSLIG.ASISLASIAGLVLTIGLAVDAHILIYERVREDRR.....KGYSVVQAMESGFYRALSTIVDANLTTLIA
ALVLFLLGSGTVH.....GFALTVAIGIGTTLFTTL
>SP|O83425|SECD_TREPA/326-555
LDHEGARIFSELTTKEIG..RR...LAIVSDG..............KIRSAPAIR.....EPITAGSGSISG.......F
SAEEAQNLKTALRSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQEAGVNACVAQLLN...LYI
.MFGVLSAFN.LTLTLSSIAGMILTIGMAVDANVVVFERIREELA.....LGKSRGAAVCSGFERAFWAIMDSNVTTFIA
ALFLSVLGTGPIK.....GFAYSLAIGVVSSVFTAL
>OMNI|BB0652/323-555
LDVDGSEKFFKFTQKNVG..KS...LAVVMEG..............KIKSVAGIG.....YAITGGNVSIQGD.....SF
DKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFICVYYGLSGVVAGFSLVIYN..VFL
.ILAILSAFN.FTLTLTSIAGLILTMGMAVDINIVIYERIKEEIR.....EGRRFENAFEAGFKKAFLSIMDANITTFIA
VLFLTLLGTGVIQ.....GFAWSLSVGIVASLFSSL
>SP|Q55610|SECD_SYNY3/200-437
FDEEGGQKFAELTQAVAGTGRS...LGVFLDN..............DLISAPVVGVEFANTGITGGAAVITG......NF
TIDTANDLAVQLRGGSLPFPVEVVENRTVGATLGQESIRRSLVAGFVGLVLVLVFMAVYYRLPGIVADISLMIY...AVL
.TLAAFALVG.VTLTLPGIAGFILSIGMAVDANVLIFERTREELR.....AGNTLYRSVEAGFFRAFSSILDSNVTTLIA
CAALFWFGSGLVK.....GFALTLAIGVMVSLFTAL
>SP|Q50634|SECD_MYCTU/293-530
FKGPAANIWADYTAAHIGTQT.....AFTLDS..............QVVSAPQIQEA.....IPGGRTQISGGDP...PF
TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASGSMVFA
.ILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIR.....EGRSFRSAVPRGWARARKTIVSGNAVTFLA
AAVLYFLAIGQVK.....GFAFTLGLTTILDLVVVF
>GP|466811|gb|AAA17086.1/204-441
FKSAAADVWADFTAAHIGTQT.....AFTLDS..............EVVSVPVINEA.....ILGGRTQISGGDP...PF
TAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGLLTAFSLFCSGTIIFA
.ILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIR.....EGRSFRSAVPRGWVRARKTIVSGNAVTFLA
AAVLHFLAIGQVK.....GFAFTLGLTTILDLVVVF
>GP|758288|emb|CAA59954.1/276-515
FTDKGSKKFADITGKLAQNQSPQNQFAIVLDN..............EVVSDPYVSQA.....LTGGNAEISG......SF
DQEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYRGLSFIAVCSLLVSAGLTYV
.IMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIR.....EGRTLRPAVERAWPRARRTILVSDFVSFLA
AAVLFIVTVGKVQ.....GFAFTLGLTTLLDVVVVF