HMM Seed Alignment: TIGR00864
Download Alignment>SP|P98161|PKD1_HUMAN/97-2728
DISNNKISTLEEGIFANLFNLSEINLSGNPFECDCGLAWLPQWAEEQQVRVVQPEAATCAGPGSLAGQPLLGIPLLDSGC
GEEYVACLPDNSSGTVAAVS....FSAAHEGLLQPEACSAFCFSTGQGLAALSEQGWCLCGAAQPSSASFACLSLCSGPP
APPAPTCRGPTLLQHVFPASPGATLVGPHGPLASGQLAAFHIAAPLPVTDTRWDFGDGSAEVDAAGP....AASHRYVLP
GRYHVTAVLALGAGSALLGTDVQVEAAPAALELVCPSSVQSDESLDLSIQNRGGSGLEAAYSIVALGEEPARAVHPLCPS
DTEIFPGNGHCYRLVVEKAAWLQAQEQCQAWAGAALAMVDSPAVQRFLVSRVTRSLD..VWIGFSTVQGVEVGPAPQGEA
FSLESCQNWLPGEPHPATAEHCVRLGPTGWCNTDLCSAPHSYVCELQPGGPVQDAENLLVGAPSGDLQGPLTPLAQQDGL
SAP.HEPVEVMVFPGLRLSREAFLTTAEFGTQELRRPAQLRLQVYRL...LSTAGTPENGSEPESRSPDNRTQLAPACMP
GGRWCPGANICLPLDASCHPQACANGCTSGPGLPGAP....YALWREFLFSVPAGPPAQYSVTLHGQDVLMLPGDLVGLQ
HDAGPGALLHCSPAPGHPGPRAPYLSANASSWLPH........................LPAQLEGTWG....CPACALR
LLAQREQLTVLLGLRPNPGLRLPGRYEVRAEVGNGVSRHNLSCSFDVVSPVAGLRVIYPAPRDGRLYVPTNGSALVLQVD
SGANATATARWPGGSLSARFENVCPALVA.......TFVPACPWETNDTLFSVVALPWLSEGEHV....VDVVVENSASR
ANLSLRVTAEEPICGLRATPSPEARVLQGVLVRYSPVVEAGSDMVFRWTINDKQSLTFQNVVFNVIYQSAAVFKLSLTAS
NHVSNVTVNYNVTVERMNRMQGLQVSTVPAVLSPNATLALTAGVLVDSAVEVAFLWTFGDGEQALHQFQPPYNESFPVPD
PSVAQVLVEHNVTHTYAAPGEYLLTVLASNAFENLTQQVPVSVRASLPSVAVGVSDGVLVAGRPVTFYPHPLPSPGGVLY
TWDFGDGSPVLTQSQPAANHTYASRGTYHVRLEVNNTVSGAAAQADVRVFEELRGLSVDMSLAVEQGAPVVVSAAVQTGD
NITWTFDMGDGTVLSGPEATVEHVYLRAQNCTVTVGAGSPAGHLARSLHVLVFVLEVLRVEPAACIPTQPDARLTAYVTG
NPAHYLFDWTFGDGSSNTTVRGCPTVTHNFTRSGTFPLALVLSSRVNRAHYFTSICVEPEVGNVTLQPERQFVQLGDEAW
LVACAWPPFPYRYTWDFGTEEAAPTRARGPEVTFIYRDPGSYLVTVTASNNISAANDSALVEVQEPVLVTSIKVNGSLG.
.LELQQPYLFSAVGRGRPASYLWDLGDGGWLEGPEVTHAYNSTGDFTVRVAGWNEVSRSEAWLNVTVKRRVRGLVVNASR
TVVPLNGSVSFSTSLEAGSDVRYSWVLCDRCTPIPGGPTISYTFRSVGTFNIIVTAENEVGSAQDSIFVYVLQLIEGLQV
VGG.............GRYFPTNHTVQLQAVVRDGTNVSYSWTAWRD...RGPALAGSGKGFSLTVLEAGTYHVQLRATN
MLGSAWADCTMDFVEPVGWLMVAASPNPAAVNTSVTLSAELAGGSGVVYTWSLEEGLSWETSEPFTTHSFPTPGLHLVTM
TAGNPLGSANATVEVDVQVPVSGLSIRASEPGGS.FVAAGSSVPFWGQLATGTNVSWCWAVPGGSSKRGPHVTMVFPDAG
TFSIRLNASNAVSWVSATYNLTAEEPIVGLVLWASSKVVAPGQLVHFQILLAAGSAVTFRLQVGGANPEVL.PGPRFSHS
FPRVGDHVVSVRGKNHVSWAQAQVRIVVLEAVSGLQVPNCCEPGIATGTERNFTARVQRGSRVAYAWYFSLQKVQGDSLV
ILSGRDVTYTPVAAGLLEIQVRAFNALGSENRTLVLEVQDAVQYVALQSGP..CFTNRSAQFEAATSPSPRRVAYHWDFG
DGSPGQDTDEPRAEHSYLRPGDYRVQVNASNLVSFFVAQATVTVQVLACREPEVDVVLPLQVLMRRSQRNYLEAHVDLRD
CVTYQTEYRWEVYRTASCQRPGRPARVALPG.............VDVSRPRLVLPRLALPVGHYCFVFVVSFGDTPLTQS
IQANVTVAPERLVPIIEGGSYRVWSDTRDLVLDGSESYDPNLEDGDQTPLSFHWACVASTQREAGGCALNFGPRG.SSTV
TIPRERLAAGVEYTFSLTVWKAGRKEEATNQTVLIRSGRVPIVSLECVSCKAQAVYEVSRSSYVYLEGRCLNCSSGSKRG
RWAARTFSNKTLVLDETTTSTGSAGMRLVLRRGVLRDGEGYTFTLTVLGRSGEEEGCASIRLSPNRPPLGGSCRLFPLG.
.............AVHALTTKVHFECTGWHDAEDAGAPLVYALLLRRCRQGHCEEFCVYKGSLSSYGAVLPPGFR.PHFE
VGLAVVVQDQLGAAVVALNRSLAITLPEPNGSATGLTVWLHGLTASVLPGLLRQADPQHVIEYSLALVTVLNEYERALDV
AAEPKHERQHRAQIRKNITETLVSLRVHTVDDIQQIAAALAQCMGPSRELVCRSCLKQTLHKLEAMMLILQAETTAGTVT
PTAIGDSILNITGDLIHLAS
>GP|2627436|gb|AAB86683.1/120-2819
DLSNNQISTIEEGTCNRQCNLTQIDLSSNPFECHCKLFRLVSWLREKGVKVRRPEATLCDNPPALRHRPLLNVSLLT..C
DLNYVACLKESSSGGGAERSELVIFSSSTPGNFTREQCNSVCFTASHRYGGLGGRHECLCSTN..SEPNFISESQCS...
....AACTNPQVMEVIG.ALP.LPIQNVHSSIS......FSAASSVAPVTMSWDFGDLSSRVNTSGAGGTTTTSHKYGHP
GRYLVSLMGWSGNNKVSAHGEVVVTLPP.KLELHCPTLVVANQSLQLTLVSWGSVDVDVDWKITKHGVQVAKAS.PHCPK
DGVLHEESSRCFQIVPGELSWTDARKQCLDRG.GDLAIVRNDALRNLLARKVTHSMERGVWLGLSDVNSAGK..LHWVNG
SEAQEGEEGLAPWSSVARGNLCVSLDQRSQTSSHSCNARRAYVCQYNPQVRVPDSGVFAMGLAVFPSHHLLQATAAMITT
PPPPHGGVEVLLFPALSFVRAGRLSSLEFVTRELSSQTHILFQIYRPRCRYPGCGGPACSPMALCVPSESRSADPPSCPK
LEQWCPFQHRCLPLSSPCQPSSCLN.CSQGHQLPSEARMPLYTLQYEVLFSLTAGPAAHVLLQDQLEDLLVSRGDVIALQ
HDAGPASLIHCQSSP.HSLWRQPVFALNLSEWFGINNTPVPPDNLAGDGADPLPDPELDLKALVEGTRGSWLENAVCPIR
VLYVGQSETRLRGAELSAGLPQPGLYNLLVTSAKQSDLVSASCSLQVLPPLD.LTVLHPSPQNGTLFLESNRTRLLLRVQ
S..RYETKAFYRTSNSSATFHPYCPQEFSSRLCHPSTSEGSGAEVAEPSMYAVLDLN.LKIKEHTGPVQVELMAHNNVTE
ASLTVLVQLEESLRGLVVQPHPARRVLMESVVSYTASVLEGSNPTFKWTVDDKPFFTYYNTVLNVIYQHADVYKLTVTAM
NHVSTLTEDFNVTVDRLQPMTNLTVKGVPDVVPQGSTQTLTTSVLIDMAVPATVRWSFGDGGYEQFEHKPPYPSSLTCPE
.SPYQVLLSSNVTYIYSQPGIYTAVVSVSNRYENISRSINMSVYSILTRVDIQTEPSLLLAGKTADFEAHPLPSPYGIHY
EWNFGDGSALLQGRR..VAHTFEKSGPFNVCVSVNNTISSTAVCTEMFAYEEIESLTAESSSPTELHSATTVRAHLSSGN
NITWTFSMGDGKSYTLSEPTVSHKYAKDGRFTVNITAMNAVSSGWTIIPVEVFVFQVAGIEPSGCVGEHALVNFRARVSG
NASSYLYEWSFGDGSPNETHHGNPGISHTYRGNGTHPLSLTITSGVSKANFVTQVCVQPVLTKISVTAEKSHFAVGEKIQ
FQARAEPEFNYTYEWDFGGEEDLVLPHAPANVVKTYNNPGCYVVTVAASNNVSNTTGSISIEVLTPVGAVVFQHNGTHYN
NLTLGVPYYFSAFSSASNVSYLWNFGHGNLLKGQNILHTFNTPGHHNITLTAANRVGKNHTTVPVAVLASVSGLTINSSL
VNVPLNTSVHFEAHMDEGDSVRFSWILCDHCTPIFRNNTMFYTFRSVGTFNIIVTAENDVGAAQASIYLFVQRELEGLQI
LVETAEGGGGGVQELDWCYFETNRVVRFHAGFKEGTNLTFTWNVILKNEPDNSIFNLTGKTAKVNPSKPGPCDIFLQAAN
LLGQVTVNRTIYFLEPARNVQLQISDNPVAVNALINMTVLNMEGSNLQYRWFVNG.DDLQWSKSWMSHTFTSAGQKQVTV
KVFNEVSSEVRSEIVSVQEVISGLKITSADATEQNYFPTDVSVCLQGELSTGTNVTWSWLIDGMS.KMQKKACVTFPKPK
TVAVTLNATNDVSGKVVSREFFVQERIFSLELKASKKIAAINEKVEFSISLVAGTNVNLSLSISRDATVVLQPNQTYVHT
FSRVDTYMVNLTAYNEVSCKRRNLHIEVMEPVRGLSIQDSCAA.IAVGEKKVFVANVQTGKPVHFLWTFDLHHLHKET..
.HMGKEVSYTAEEEGLLTIYLGAINALHAQNITRQMLAQNVLMDAVLYALPQDTFVNKMVTMNVLVTPKSNFMDCLWIFG
DVSAPRHTNNTTVGHEYTHPGHYRVQVNCSNLVSWVSAHAEINVSVLECEEPEVQVVQAPRLAIWRSQPTLVEASVDLKG
CLRYGAQYLWQILSAPSCDNDPHFASGRVNGATRSFPVIPLPAEVDVQRLQLSLPKMVLAAGNYTLVFSLSYENVPLKKA
ACLQLGVMAARLMPIIEGGTYRVWSRTQDLQLSAEQSYDPNMDPDNQSLLHYHWECQSTSKGPEHCSTLSFGLGSKGPVL
GISGSELEAGIEYTFKLSIGKEGMPPESTTQTVLVQSGHIPMVYLECVSCKAQSLYEVSQNSYVYLRGTCSNCQ.GFHRG
RWSAVTLQNDTLVLDSSSTTTGSGGMNLVLRQGVLHLGESYNFTLHVTDDSLDGEGAASITLHHNMPPDGGECHLRRGGE
TGQEHGDKEDEVWRIETLLDRVQFSCSGYSDLGVSETPLLYSLLVNRCRDDYCEEFYVYRGSSPEHSAFLPPGFSSAQHR
VSVFITVEDHQGAAIRALNKTIKVVLPDPPPEYSSLPHWLSDLIDSKLKKLLDQGDFQRVRELSLVLITVLNEYEQTRES
VRVSRVERGYRGRVRNNITRALTALDLTTVNDIQQTSAALAQCTAVSREFICEECQNSTLNKLESMLEILQTDTKQGIVT
PTEIADNILNIMGDLIHQVS