HMM Seed Alignment: TIGR00617
Download Alignment>SP|P27694|RFA1_HUMAN/2-612
VGQLSEGAIAAIMQK....GDTN....IKPILQVINIRPITTGNSP...PRYRLLMSDGLNTLSSFMLATQLNPLVEEEQ
.LSSNCVCQIHRFIVNTL.KD........GRRVVILMELEVLKSAEAVGVKIGNPVPYNEG.........LGQPQVAPPA
PAASPAASSRPQPQNGS.SGMGSTVSKAYGASKTFGKA.AGPSLSHTSGGTQSK.VVPIASLTPYQSKWTICARVTNKSQ
IRTWSNSRGEGKLFSLELVD.ESGEIRATAFNEQVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVM
PCEDDHH..LPTVQFDFTGIDDLENKSKD.SLVDIIGICKSYEDATKITVRSNNREVAKRNIYLMDTSGKVVTATLWGED
ADKFD......GSRQPVLAIKGARVSDF.GGRSLSVLSSSTIIANPDIPEAYKLRGWFDAEGQA...LDGVSISDLKSGG
VGGS........NTNWKTLYEVKSENLGQ.GDKPDYFSSVATVVYLRKE.NCMYQACPTQ..D..CNKKVIDQQNGLYRC
EKCDTEFPNFKYRMILSVNIADFQENQWVTCFQESAEAILGQNAAYLGELK..DKNEQAFEEVFQNANFRSFIFRVRVKV
ETYNDESRIKATVMDVKPVDYREYGRRLVMSIRR
>SP|Q24492|RFA1_DROME/3-595
LASLSTGVIARIMH.....GEVV....DAPVLQILAIKKINSAADS...ERYRILISDGKYFNSYAMLASQLNVMQHNGE
.LEEFTIVQLDKYVTSLVGKDGA......GKRVLIISELTVVNPGAEVKSKIGEPVTYEN...........AAKQDLAPK
PAVTSNSKP...IAKKE.......PSHNNNNNIVMN.......SSINSGMTH.....PISSLSPYQNKWVIKARVTSKSG
IRTWSNARGEGKLFSMDLMD.ESGEIRATAFKEQCDKFYDLIQVDSVYYISKCQLKPANKQYSSLNNAYEMTFSGETVVQ
LCEDTDDDPIPEIKYNLVPISDVSGMENK.AAVDTIGICKEVGELQSFVARTTNKEFKKRDITLVDMSNSAISLTLWGDD
AVNFD......GHVQPVILVKGTRINEFNGGKSLSLGGGSIMKINPDIPEAHKLRGWFDNGG.......GDSVANMVSAR
TGGGS......FSTEWMTLKDARARNLGS.GDKPDYFQCKAVVHIVKQE.NAFYRACPQS..D..CNKKVVDEGNDQFRC
EKCNALFPNFKYRLLINMSIGDWTSNRWVSSFNEVGEQLLGHTSQEVGEAL..ENDPAKAEQIFSALNFTSHIFKLRCKN
EVYGDMTRNKLTVQSVAPINHKEYNKHLLKELQE
>GP|2828288|gnl|PID|e1248938|AL/3-602
EVSLTAGAIGKIMN.....GEVTTEADMIPVLQVTDLKQIMAQQDPTR.ERFRMVLSDG.TYLHQGMLGTDLNNLVKEGT
.LQPGSIVRLTRFVGDVI.K.........GRRIVIVPQLEVLK...QISDIIGHPVPGGK...........HNDQRGADS
.GIKFNTTE....QQGSG......IRQVNNIEPGRS....NAAISPQVGAPP.K.IIPVNALSPYSGRWTIKARVTNKAA
LKQYSNPRGEGKVFNFDLLDADGGEIRVTCFNAVADQFYDQIVVGNLYLISRGSLRPAQKNFNHLRNDYEIMLDNASTIK
QCYEEDA.AIPRHQFHFRTIGDIESMENN.CIVDVIGIVSSISPTVTIT.RKNGTATPKRSLQLKDMSGRSVEVTMWGDF
QSLCD......SGVFPVLAVKAGRISEF.NGKTVSTIGSSQLFIDPDFVEAEKLKNWFEREGKS...VPCISLSREFSG.
.SGK........VDVRKTISQIKDEKLGT.SEKPDWITVSATILYLKFD.NFCYTACPIMNGDRPCSKKVTDNGDGTWRC
EKCDKSVDECDYRYILQLQIQDHTDLTCVTAFQEAGEEIMGISAKDLYYVKNEHKDEEKFEDIIRKVAFTKYNFKLKVKE
ETFSDEQRVKATVVKVDKLNYSADTRTMLGAMDK
>SP|Q92372|RFA1_SCHPO/2-607
AERLSVGALRIINT.....SDASSFP.PNPILQVLTVKELNSNPTSGAPKRYRVVLSDS.INYAQSMLSTQLNHLVAENK
.LQKGAFVQLTQFTVNVM.KE.........RKILIVLGLNVLT.ELGVMDKIGNPAGLETVDA....LRQQQNEQNNASA
PRTGISTSTNSFYGNNA.......AATAPAPPPMMK.....KPAAPNSLSTI...IYPIEGLSPYQNKWTIRARVTNKSE
VKHWHNQRGEGKLFSVNLLD.ESGEIRATGFNDQVDAFYDILQEGSVYYISRCRVNIAKKQYTNVQNEYELMFERDTEIR
KAEDQTA..VPVAKFSFVSLQEVGDVAKD.AVIDVIGVLQNVGPVQQITSRATSRGFDKRDITIVDQTGYEMRVTLWGKT
AIEFS......VSEESILAFKGVKVNDF.QGRSLSMLTSSTMSVDPDIQESHLLKGWYDGQGRGQEFAKHSVISSTLST.
.TGR........SAERKNIAEVQAEHLGM.SETPDYFSLKGTIVYIRKK.NVSYPACPAA..D..CNKKVFDQG.GSWRC
EKCNKEYDAPQYRYIITIAVGDHTGQLWLNVFDDVGKLIMHKTADELNDLQ..ENDENAFMNCMAEACYMPYIFQCRAKQ
DNFKGEMRVRYTVMSINQMDWKEESKRLINFIES
>SP|P22336|RFA1_YEAST/3-617
SVQLSRGDFHSIFTN....KQRYDNP.TGGVYQVYNTRKSDGANSN...RKNLIMISDG.IYHMKALLRNQAASKFQSME
.LQRGDIIRVIIAEPAIVRER........KKYVLLVDDFELVQ...SRADMVNQTSTFLDN......YFSEHPNETLKDE
DITDSGNVANQTNASNAG.....VPDMLHSNSNLNANERKFANENPNSQKTR.P.IFAIEQLSPYQNVWTIKARVSYKGE
IKTWHNQRGDGKLFNVNFLD.TSGEIRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIE
ECFDESN..VPKTHFNFIKLDAIQNQEVN.SNVDVLGIIQTINPHFELTSRAG.KKFDRRDITIVDDSGFSISVGLWNQQ
ALDFN......LPEGSVAAIKGVRVTDF.GGKSLSMGFSSTLIPNPEIPEAYALKGWYDSKGRN.....ANFITLKQEPG
MGGQSAASLTKFIAQRITIARAQAENLGR.SEKGDFFSVKAAISFLKVD.NFAYPACSNE..N..CNKKVLEQPDGTWRC
EKCDTNNARPNWRYILTISIIDETNQLWLTLFDDQAKQLLGVDANTLMSLK..EEDPNEFTKITQSIQMNEYDFRIRARE
DTYNDQSRIRYTVANLHSLNYRAEADYLADELSK
>GP|2258469|gb|AAB71836.1/6-626
APSVTPGAVAFVLENA.SPDAATGVPVPEIVLQVVDLKPIGT.......RFTFLASDGK..DKIKTMLLTQLAPEVRSGN
.IQNLGVIRVLDYTCNTIGEK........QEKVLIITKLEVVFKALDSEIKCEAEKQEEKPAI....LLSPKEESVVLSK
PTNAPPLPPVVLKPKQE......VKSASQIVNEQRG....NAAPAARLAMTR.R.VHPLISLNPYQGNWIIKVRVTSKGN
LRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVE
EAEGETF..IPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDL
ATTTGQELLDMVDSAPIIAIKSLKVSDF.QGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKG..TSMASIGSDMGASR
VGGAR.....SMYSDRVFLSHITSDPNLG.QDKPVFFSLNAYISLIKPDQTMWYRAC.KT.....CNKKVTEAMGSGYWC
EGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIR.KEEGDDSYLLKLKEATWVPHLFRVSVTQ
NEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAK
>SP|Q19537|RFA1_CAEEL/12-648
NKYHTNGKLRLTTGYVQEAIENNGYPGHDGIVQVLKGKVEQGEQLG.HAFTFRIRISDGVFQYNALMSADIDDQIKREVE
HLVEGTIIALTKFEIYDQGEGAKNCFLIKGYKILSRYHQVLTSPEVKPRSHSGKPDEHKGYRPNIIIEDVWPEAEGMAAD
YQENMANPPAAKAPKREFG...EEASYNRAAAPEATRARAVPPPARRTASNTERGVMPIAMVTPYVSNFKIHGMVSRKEE
IRTFPAKN..TKVFNFEITDSNGDTIRCTAFNEVAESLYTTITENLSYYLSGGSVKQANKKFNNTGHDYEITLRSDSIIE
AGGELLA..APKLILKRVKLGEIAGYAGQ..LIDVLVVVEKMDPEATEFTSKAGKSLIKREMELIDESGALVRLTLWGDE
ATKALVD....DYVQKVIAFKGVIPREFNGGFSLGTGSATRIISVPEIAGVSELYDWYANVKP.......TTEVKMMSQA
AGGS........NEAPRTIAGLQEMQFGKDSDKGDYATVKAMITRVNPT.NALYRGCASEG....CQKKLVGEN.GDYRC
EKCNKNMNKFKWLYMMQFELSDETGQVYVTAFGDSAAKIVGKSAAELGELH..DESPDEYNAIFERLQFVPKMWRLRCKM
DSYNEEVRQKMTVYGVDDVNQDKYIENLKQMIEQ