HMM Seed Alignment: TIGR00605
Download Alignment>GP|603402|gb|AAB64689.1/1-754
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..................................MNEDLPKEYFEL..................................
.............IRKALNEKEAEKAPLSRRR................................................
......................................RVRRKNQP.LPDAKKKFKTGLNELPRESVVTVNLDS..SDDG
VVTVPTDDSV...EEIQSSEEDYDSEEFEDVTDGNEVAGVEDISVEI.....KPSSKRNSD..ARRTSRNVCSNEERKRR
KYFHMLYLVCLMVHGFIRNEWINS..KRLSRKLSNL........................VPEKVFELLHPQ........
..KDEELPLRSTR....KLLDGLKKCMELWQKH...............................................
..............WKITKKYD...NEGLYMRT.....................WKEIEMSANNK...............
....................................RKFKTLKR...............SDFLRAVSKGHGDPDISVQGF
VAM...................................LRACNVNARLIMSCQPPDFTN.....................
........................................MKIDTSLNGNNAYKDMVKYPIFWCEVWDKFSKKWIT.VDP
VNLKTIEQ....VR...LHS.KLAPKGVACCERN.........MLRYVIAYDRKYGCRDVTRRYA.QWMNSKVRKRRITK
DDFGEKWFRKVITALHHRKRTK..IDDYEDQYFFQRDESEGIPDSVQDLKNHPYYVLEQDIKQTQIVKPG.CKECGYLKV
HGKVGKVLKVYAKRDIADLKSARQWYMNGRILKTGSRCKKVIK.........RTVGRPKGEAEEE.DERLYSFEDTELYI
PPLASASGEITKNTFGNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREA
IETAIDGIEFIQEDDNRKEHLLGALESWNTLLLKLRIRSKLNSTYGKIAEEEPNVTKEQNIADNHDNTETFMGGGFLPGI
ANHEARPYSEPSEPEDSLDYVSVDKAEESATDDDVGEDYSDFMKELEMSEESD
>GP|37996|emb|CAA46158.1/1-823
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.....MNEDSNEEEEESENDWEEVEELSEPVLGDVRESTAFSRSLLP.................................
.............VKPVEIEIETPEQAKTRERSE..............................................
......................................KIKLEFETYLRRAMKRFNKGVHEDTHKVHLLCLLANGFYRNN
ICSQPDLHAIG.LSIIPARFTRVLPRDVDTYYLSNLVKWFIGTFTVN.....AELSASEQDNLQTTLERRFAIYSARDDE
ELVHIFLLILRALQLLTRLVLSLQPIPLKSATAKGK........................KPSKERLTADPG........
..GSSETSSQVLENHTKPKTSKGTKQEETFAKG.T.............................................
.............CRPSAKGKRN..KGGRKKRSK..........PSSSEEDEGPGDKQEKATQRRPH.............
...................................GRERRVASRVSYKEESGSDEAGSGSDFELSSGEASDPSDEDSEPG
PPK...................................QRKAPAPQRTKAGSKSASRTHR....................
......................................GSHRKDPSLPAASSSSSSSKRGKKMCSDGEKAEKRSIAGIDQ
WLEVFCEQEEKWVCVDCVH..GVVGQPLTCYKYAT.......KPMTYVVGIDSDGWVRDVTQRYDPVWMT.VTRKCRVDA
EWWAET.LRPYQSPFMDRE.......KKEDLEFQAKHMDQPLPTAIGLYKNHPLYALKRHLLKYEAIYP..ETAAILGYC
RGEA.....VYSRDCVHTLHSRDTWLKKARVVRLGEVPYKMVKGFSN...RARKARLAEPQLREENDLGLFGYWQTEEYQ
PPVA.VDGKVPRNEFGNVYLFLPSMMPIGCVQLNLPNLHRVARKLDIDCVQAITGFDFHGG.YSHPVTDGYIVCEEFKDV
LLTAWENEQAVIERKEKEKKEKRALGNWKLLAKGLLIRERLKRRYGPKSEAAAPHTD.AGGGLSSDEEE.....GTSSQA
EAARILAASWPQNREDEEKQKLKGGPKKTKREKKAAASH...LFPFEKL....
>SP|Q24595|XPC_DROME/1-1293
MSDEEEDSVSEGFSASEDEWKPSKDVKGGESSDDDDSDFDELQAEGGAAGSSGRSSAVAGKRGDHKAPSGIKGSSVKKRK
PTGQSLRSKLYNKYRPPPKTFPTSPSQQQENTPRASGSKNAKTPNESGARNQHDPADSSSESSVEDYLVNPADLDLHSTF
FAGGQKEKSPAPQFDCNAGITNLSDSGSEDNNESSFEDKAGNAFDFRGLLENANSLERTRDALSKRNVTATPPRSQAATM
DVNALLALGENQNYQSVEVEEREGNQRKKAGRGAPAAPPTLDEPSRLSKTKSTRIKRHTKTRPVSTVVANAGDTDDSDFE
EVADADLSSDQDDGETPNISGDLEIRVGLEGLRPTKEQKTQHELEMALKRRLNRDIKDRQILLHKVSLMCQIARSLKYNR
LLSESDSLMQATLKLLPSRNAYPTERGTELKYLQSFVTWFKTSIKLLSPNLYSAQSPATKEAILEALLEQVKRKEARCKQ
DMIFIFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEKPKKDKKAGKPAEKESSKST
ISKEAEKKNNAKKAEAKPLSKSTTKGSETTKSGTVPKVKKELSLSSKLVEKSKHQKAHTSSKSDTSFDEKPSTSSSSKCL
KEEYSELGLSKKLLKPTLSSKLVLKSKNQSSFSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSKLEDKKVASSAETKTK
VQSSLLKRVTTQNISESGDSKKSKVAPVDTFSPVAGRTRRATVKPKTEEKPQVVGSPVIPKLMLSKVKQLNAKHSDTENA
SPANKHLQEQRNTRETRSRSKSPKVLISPSFLKKKSDGADSTSAPQKHQMAPETKARISPNFLSEALPARQLRSRGQKAS
SLAIPQLDGGDDVPLPKKRPKLEKLKNSQDSDEVFEPAKPVKKAPVLPKSVQNLRKDRRVMSTDDEGGSRLNRKTDASDM
WVEVWSDVEEQWICIDLFK..GKLHCVDTIRKNAT.......PGLAYVFAFQDDQSLKDVTARYCASWST.TVRKARVEK
AWLDET.IAPYLGRRTKRD.......ITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYP..PDAPTLGFI
RGEA.....VYSRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARP......KWDRLTRTVIKDQ.PLEIFGYWQTQEYE
PPTA.ENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFHQG.ACHPMYDGFIVCEEFRDV
VTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIKGLLIRERLKKKYNF.................................
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>SP|Q10445|YDEC_SCHPO/1-638
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...................................................................MMSDEDNTYSDDE
EWLDLDLGLPN..NDIKTAPILNSSLLSSAVHGERLIQERPTHDFG........DVEATVDRTVEKRSRLKITSVDRKIR
LQIHQLHLLCLTYHLCTRNTWCDD...NRLNYLVKY........................IPPGIRVSLHPSSQ......
..KSQMIRNKTFLHGLAGLVEVWKRKYKITTNG...............................................
.............LRKPNYGLLQNNSLISESLS.....................LEEFCKNSKLLSG.............
...................................SRDYGTQLFASILRNLNVPTRLVFSLQVLSFRFKGAINEASSHEI
VPA...................................WSQQMENDSSSDISESAHITSR....................
......................................FRKRRKIIQPSFSNLSHLDASDIVTEDTKLKVIDSPKP..VF
WVEAFNKAMQKWVCVDPFGD.ASVIGKYRRFEPASSDHL...NQMTYVFAIEANGYVKDVTRKYCLHYYK..ILKNRVEI
FPFGKAWMNRIFSKIGKPRDFYNDMDAIEDAELLRLEQSEGIPRNIQDLKDHPLFVLERHLKKNQAIKTG.KSCGRINTK
NGVEL....VYPRKYVSNGFSAEHWYRKGRIIKPGAQPLKHVK..........NG........DK.VLPLYDEEATQLYT
PKPV.VANIVPKNAYGNIDLYVPSMLPYGAYHCRKRCALAAAKFLEIDYAKAVVGFDFQRK.YSKPKLEGVVVSKRYEEA
IDLIAEEIDQEEKEAEARNVRKTCLLLWKRLITGLRIRQRVFEEYG..................................
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>GP|2213553|emb|CAB09777.1/1-686
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....................................MPPKRKASKNSVRGRKRRTRTNNLPLNPEVKEETVVSSTHRQTR
SQSKKPSLSSS..AEPPSESLDDNISALNSLQRSASSSEKGSDEDNEK...LGSSEDDEFDDDFDTWEQVDLSPNKQEDK
KDLHIVTQHITPQLTKESKKGSSS.AMDKSIRLSIH........................IMHFTCLLYHGSVR......
..NRWLMNSLLLDGLRDLLVEKQPSVVEAWVCS...............................................
..............SQTHEDLLKLLNGLRMWWNK....................SFKIESHGLRKLG.............
......................................YRTLKQG..............FDIGFSPEIFHNFHEYQASLL
SLK...................................GSRDLAAQGFTALCRSLNLKAR....................
........................................LIFSLQPLTFSTASYDDWSPHILPEETSTSIDDDLRYPIF
WTEIYDQSEKKWIAVDAVVLNGVYTNDMTWFEPKGAYAESKHLRMGIVAAYDNDLYAKDVTLRYTDYQSSRLKKIRHVSF
ADKYFDFYKAIFGQLAKRNKD...AEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTATFG
NGKKATSEEVYLRKDVVICKTPENYHKEGRVIKEGEQPRKMVKARAVTISRKREHEFRVAETNEPVLQGLYSSDQTELYV
PPPI.KDGIIPKNGYGNMDCFVESMIPKGAAHLPYRGIAKIAKKLNIDYADAVTGFEFRKH.RAIPVTTGIIVPEESAQM
VYEEFLECEKIRIEKQQMKERKIIYGQWKHLLNALRIRKRIEEQYA..................................
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