HMM Seed Alignment: TIGR00071
Download Alignment>SP|P07649|TRUA_ECOLI/10-247
YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN...........EPITVFCAGRTDAGVHGTGQVVHFETTAL.
RKD..........AAWTLG..VNA.NLPGDIAVRW..VKTVPDDFHARFSATAR..........................
............................................................RYRYIIY.NHRLRPAVLSKG
VTHFY.EPLDAERMHRAAQCLLGENDFTSFRAVQ....CQSRTPWRNVMHINVTR.......HGPYVVVDIKANAFVHHM
VRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL.
>SP|P45291|TRUA_HAEIN/2-238
.KIALGIEYNGQNYYGWQRQEKVRSVQEELEKALSHIAN...........EKIEIFCAGRTDSGVSGTGQVVHFETNAV.
RPE..........KAWAFG..TNA.HLPDDIAVSW..AKQVDDEFHARFSATAR..........................
............................................................RYRYILY.CNKLRSAILAGG
ITHCH.LDLDAEKMHQAGQCLLGEQDFSSFRAAQ....CQSHTPWRNVHHLNVSR.......IGKYIIVDIQANAFVHHM
VRNIVGSLIEVGTGNQPIEWMQWLLEQKNRQLAAPTAKPDGLYL.
>SP|P73295|TRUA_SYNY3/10-249
QRVALVMQYLGTHFHGWQRQPNFSSIQEEVELAIAKVVG...........QPVTLHGAGRTDAGVHAAAQVAHFDDPVGQ
IPP..........HRWSKI..LNG.HLPQDIIVRG..SAAVDSHWHARFSALWR..........................
............................................................RYRYSIY.TDQWPNLFADQF
SWHYYRFPLQEKTIQAAMEPLLGKHHLAAFHRAG....SARRHSWVEVQGVECYR.......RGPMVYLEIQANGFLYGM
VRLLVGMLAEVGSGQRSLTDFNDIWVNQRRDLVKYAAPAKGLCL.
>SP|P70973|TRUA_BACSU/2-240
.RLKCTISYDGHLFNGYQVQPGKRTVQDELEKALAVLHK.........SKDRIPVVSSGRTDSGVHAAGQVIHFDTPLS.
IPA..........ERWPYA..LNA.LLPDDIAVKQ..AEIADDGFHARFSAVKK..........................
............................................................EYRYFVY.TEKHPDVFKRHY
AYHFS.YRLNVQDMREAAKHPIGTHDFTSFCAAK....TEVQDKVRTIYELDWTE.......TADGLQMRITGSGFLYNM
VRIIAGTLLDAGIGKISPDEVKSMLEAKDREAAERTAPGHGLYL.
>SP|P70830|TRUA_BORBU/2-240
KKILAEIAYDGSIYHGFQIQPTKPTVQGEIEKALMKINK...........KKVKIHSSGRTDKGVHAKKQIITFDIKIN.
IQL..........NNLKKA..LNAILLKNSIKILK..LRYVKNSFHPRFSAQKR..........................
............................................................KYSYCIL.NSDNYYPWEG.Y
QAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIK....DKSKSKFRHIYFAKFKK.......RGKYIIFEIIGSSFLWKM
VRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFL.
>SP|O28544|TRUA_ARCFU/3-218
.KFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGV...........ENPRLRSAGRTDAGVHAYGQVISFYSEDK.
IFP..........RMLNAE..L.....PEDITAWA..WAKVSEDFDPRRAKS.R..........................
............................................................VYTYVMY.GS..........
.......DYDISAMRKAVKELIGVHDFSNFTKKF....GEGESCVREIISADIRA.......DREFIIFEIEGNAFTWNM
VRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLIL.
>SP|P56144|TRUA_HELPY/2-237
RCFKATIAYDGAYFLGYAKQPNKLGVQDKIEDALNALGI...........KSV.VIAAGRTDKGVHANNQVLSFHAPKH.
WNA..........AKLFYY..LAP.KLAPHIVLKK..LE..EKNFHARFDAQKR..........................
............................................................AYRYLLT.KNLKTPFLAPYI
ACGDY.GSLDA..LNTALKQFTGKHDFSMFKKEGGATTNPKRTIFNAFAYKTFII.......GHECVVFKIIGDAFLRSS
VRLIIQACVQYSLEKITLAEIQAQIHNL.KATIRTPIMANGLYL.
>SP|Q50291|TRUA_MYCPN/4-237
Y..LAIVAYNGAPFRGWAKQPGYHTVQGQIEQNLALIYQ...........TPINIYGSGRTDKGVHAINQTFHVDLPDK.
LPL..........KQLIAK..LNQ.LNYPDIFVKA..LVPVAPRFHARFAVKTKVYEYLINTRAFNPA............
............................................................QYHTVWQYNH..........
.......PLDLAQLEADTTLFLGRKDFWSFST......ASQKDTQRTISKIIVQQD......HTGTVKLTFFGNGFLRNQ
IRMMVASLVALNNRTLMRETVQQLFDQPQKGGCKVKAPACGLYL.
>SP|P47428|TRUA_MYCGE/4-237
Y..LGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIG...........RKIKVIGSGRTDKGVHAINQTFHVDINGE.
INL..........NLLIRK..INQ.LIKPHCIVKT..LVLVNDSFHARFQVKTKVYEYLINCGNLNPL............
............................................................QFNYVWQLNQ..........
.......QLDLEKLKADATLFLGKKNFLSFSS......SIHTDSIRTISKITIQKE......TNQLVRLTFFGSGFLRSQ
VRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLYL.
>SP|P31115|PUS3_YEAST/92-339
RFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKF..SRCGRTDKGVSAMNQVISLEVRSN.
LTDEEQRDPTNDSREIPYVHVLNQ.LLPDDIRISAVCLRP.PPNFDARFSCVHR..........................
............................................................HYKYIFN.GK..........
.......NLNIEKMSKAASYFVGERDFRNFCKLDGSK.QITNFKRTIISSKILPL.......SETFYCFDLVGSAFLWHQ
VRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLL
>SP|O26928|TRUA_METTH/2-221
RKIALKVAYIGTNYHGFQRQPDVPTVEGKLLEALEGAGII.....EDPKRARF..QIAGRTDRGVHALGNFVSFFTEED.
IHV..........NQ......IND.LLPRDIRVLA..WASVMYPFKVRYPLE.R..........................
............................................................HYRYILHREE..........
.......SMDTYSMAEAAAHFRGTHDFSNFSR......RSDRDPVRRINDVRISE.......VGDSIIIDVYGESFLWQM
VRKMVRALLMVSEGELAPDDMAGLLDTDRRVFLEPMPPENLILM.
>SP|Q59069|TRUA_METJA/2-215
Y..ILKIAYDGR.Y.SFQQQPHKQTVCDILLDALEETGF.........LAKKKVIYSGGRTDKGVSALGNFVVVELKKE.
PIL..........SYINAK..LKDKGIWVLGYREID.........EIPKVKY.R..........................
............................................................HYRYILP.NI..........
.......GYDVDAIKEGAKKMIGTHSFHNLSKRDR...TKEKSPIRTIYDIKISE.......NEFYLTVDIIGESFLWNM
VRKIVGALDLVGRGKKPVEWIDKLLDENHREGVPTFPPEGLILV.
>GP|1322568|emb|CAA96766.1/1-305
....MLLGYCGSGYYGMQYNPPHKTIEGEILTKLFDVGAISEENSLAPKKNSF..MAAARTDKGVHAMLNLLSLKITL..
RED..........T..VAK..LNA.ALPPEIRVWG..IQPVNKKFNARSACDSRWYQYLIPEFILIGPPRSSLLHRNVGG
SYRED........GSQEVWDTFLEQTRGRFSGDELCRLQDTAQKLSESDPLVQ.................DYVGLLSGTL
SG.YCLSPSKLDAFEAAMQEYVGTHNFHNFTTGKL...WGDPSAQRHIKKVVVSQA......SPGWICVRIHGQSFMLHQ
IRRMVALAVLAARCQLPPNIVRNYFNAGPRKYIPRAPAQGLLLEG
>SP|Q12211|PUS1_YEAST/75-404
RKVAVMVGYCGTGYHGMQYNPPNPTIESALFKAFVEAGAISKDNSNDLKKNGF..MRAARTDKGVHAGGNLISLKMIIE.
DPD..........IKQ..K..INE.KLPEGIRVWD..IERVNKAFDCRKMCSSRWYEYLLPTYSLIGPKPGSILYRDIEE
SKTELPGVLDEDLESKEFWEEFKKDANEKFSTEEIEAILAYVPPARDEFDINEELYQKVKKYKQLENAHRR.........
..RYRISAAKLAKFRASTSQYLGAHNFHNFTLGKD...FKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHGQSFMLHQ
IRKMVSMATLITRCGCPVERISQAYGQQKIN.IPKAPALGLLLEA