HMM Seed Alignment: TIGR00019
Download Alignment>SP|P13654|RF1_SALTY/1-360
..MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQMMLD....DPEM
REMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEG
EHGGYKEIIAKI..SG.......DGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRID
TFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDRSD
RNRTYNFPQGRVTDHRINLTLYRLDETMEGK.LDMLIEPIVQEHQADLLAALSEQE..
>SP|P43917|RF1_HAEIN/1-361
M.MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQNIEEAEILLD....DPEM
KEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIRAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANES
EQGGYKEVIVKV..TG.......EGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRID
TYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRNLLGSGDRSD
KIRTYNYPQGRVTDHRINLTIYRLDEVMNGK.IDELIQPIITEYQADQLAALSEQN..
>SP|P47849|RF1_COXBU/1-361
..MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEKAIESAEEMQQEK..DPEL
RKLAEEELEQLTLKKEELEDQLNLLLVPKDPNDERNVFLEIRAGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEG
EHGGFKEVIARV..IG.......EGVYSQLKFESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRID
TFRASGAGGQHVNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKSLVGSGDRSE
RIRTYNFPQGRVTDHRINLTLYQLDEVIEGD.LDPVIGPLIRELQAEQLAELSGE...
>SP|P55998|RF1_HELPY/1-352
MSI...LAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLENIKENKELLE....DKEL
SELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSEN
SVGGYKEIIALI..KG.......KGVYSRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVE.VSINPSDLKIE
VFRAGGHGGQCVNTTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQVGSGDRSE
RIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQFE.........
>SP|P45872|RF1_BACSU/1-356
......VLDRLKSIEERYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVDVYRQYRDASEQLADAKAMLEEKL.DAEM
RDMVKEEISELQKETETLSERLKVLLIPKDPNDDKNVIMEIRGAAGGEEAALFAGNLYRMYSRYAELQGWKTEVMEANVT
GTGGYKEIIFMI..TG.......SGAYSKLKYENGAHRVQRVPETESGGRIHTSTATVACLPEAEEVE.VDIHEKDIRVD
TFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGSGDRSE
RIRTYNFPQNRVTDHRIGLTIQKLDQILEGK.LDEVVEALIVEDQASKLQ..QSEG..
>SP|O67032|RF1_AQUAE/1-362
M.LKEAYISRLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQKELKEAKELLK.SS.DKDL
RELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRAGAGGEEAALFAADLFRMYQKYAEEKGWKVSILSSNKT
GLGGYKEVIALI..EG.......EGAYSRLKYESGVHRVQRVPVTESSGRIHTSTATVAVLPEVDETD.IKIKPEELKIE
TFRASGAGGQYVNTTETAVRITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERSE
KIRTYNFPQNRVTDHRINLTLYKLQDVLEGK.LDEIIDALRAKEIEKKLELVEKEG..
>SP|O51214|RF1_BORBU/1-357
..M...LLEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQINDTKTILE.KEDQQEM
KELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGTGGEEAALFANNLYSMYIKYSEKKKWKTEIINFNET
ELGGFKEIIFEI..KG.......KDVFKKLKYESGVHRVQRIPITESNGRLQTSAATVAVLPNIEETE.IDINEKDLRID
VYRSSGAGGQHVNTTDSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSE
RIRTYNFPQNRITDHRANITLYKLEEFMQGE.LDPLLDPLMIALQEQELKSNSI....
>SP|P47500|RF1_MYCGE/1-359
VDFDKQLFFNVEKIVELTEQLEKDLNKPNLSFEQIKVINKELKHKQPLIVKFK..ELQKLVENANEAEQILN.NSSLKEL
HEEAKKELEKIKASLPSLEEEIKFLLLPVDENNQKNVIVEIRPAAGGDESCIFLSDLFNMYKNYCTSKNWTVELNEI.IP
ASVGINFVSFAV..NG.......TDVFAKLKFESGVHRVQRVPLTEAKGRVHTSTVTVAVLPQLEEVE.ITINPSDLRID
TYRASGAGGQHVNRTESAVRITHLPTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVGSGERAE
KIRTYNYPQNRITDHRIKLTINKLNTVILGD.LDEIIEALQADEKKQQLEKFIS....
>SP|P75420|RF1_MYCPN/1-359
VEFDKQFFSSVEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFK..EFKRLIDQALEAEAILE.NNELKEL
HDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRPAAGGDESCIFLADLFNMYRNFCSNKGWKLQINEM.IP
SSVGLNFVSFEV..NG.......VDVFAKLKFESGVHRVQRVPATESKGRVHTSTVTVAVLPQLEAVE.VHINPADLRVD
TYRASGAGGQHVNRTESAVRITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVGSGDRAE
KIRTYNYPQNRVTDHRIKLTVNKLNTIILGD.LDEIIEALQADEKKQQLENFFS....
>GP|699334|gb|AAA63095.1/1-357
.......MQSIDVLLIEHAELELALADPELHSNPAEARKAGRRFARLAPIVATHRKLISARDDLQTARELA..AG.DESF
AD....EIAELESRIAELTTQLTDMLAPHDPHGPDDIVLEVKSGEGGEESALFAADLARMYIRYAERHGWTVTVLDETTS
DLGGYKDATLAISHKGASDGDAVDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEIGEVHIDESDLRID
VYRSSGKGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALANASADRASQIRTVDRSE
RIRTYNFPENRITDHRIGYKAHNLDQVLDGD.LDALFDALSAADKQSRLQ..QV....
>SP|P74707|RF1_SYNY3/1-365
M.AETYLLDKLASVEQTYQELTRMLADPDIATNPDELQRVAKARSSLEETVDTYETWKRSQEDLKGARQIVKESGNDPEM
REMAQLEVEELENAIGELEKRLTILLLPKDPNDEKNIMLEIRAGTGGDEASIWAGDLVRMYTRYAESQGWKVSLLSESLA
DMGGFKEAILEV..KG.......DRVYSQLKFEAGVHRVQRVPVTEAGGRVHTSTATVAIMPEVDDVE.VKIDPKDIEMS
TARSGGAGGQNVNKVETAVDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYDMMLQEQNDAISSNRRSQVGTGSRSE
KIRTYNYKDNRVTDHRLGRN.FDLNTALEGE.IHTIIESCISQDQQERLAELAEATNN