HMM Summary Page: TIGR04567
| Accession | TIGR04567 |
| Name | RNAP_delt_lowGC |
| Function | DNA-directed RNA polymerase delta subunit |
| Gene Symbol | rpoE |
| Trusted Cutoff | 42.00 |
| Domain Trusted Cutoff | 42.00 |
| Noise Cutoff | 40.00 |
| Domain Noise Cutoff | 40.00 |
| Isology Type | equivalog |
| EC Number | 2.7.7.6 |
| HMM Length | 83 |
| Author | Haft DH |
| Entry Date | Sep 12 2014 5:04PM |
| Last Modified | Sep 12 2014 5:27PM |
| Comment | Members of this family are the RNA polymerase delta subunit, as found in the Firmicutes and the Mollicutes. All members of the seed alignment have an extended C-terminal low-complexity region, consisting largely of Asp and Glu, that is not included in the model. Proteins giving borderline scores should be checked to confirm a similar acidic C-terminal domain. |
| References | RN [1] RM PMID:23543716 RT The delta subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell. RA Rabatinova A, Sanderova H, Jirat Matejckova J, Korelusova J, Sojka L, Barvik I, Papouskova V, Sklenar V, Zidek L, Krasny L RL J Bacteriol. 2013 Jun;195(11):2603-11. doi: 10.1128/JB.00188-13. |
| Genome Property | GenProp0262: RNA polymerase, bacterial (HMM) |