HMM Summary Page: TIGR04565

Functionouter membrane beta-barrel protein
Trusted Cutoff60.00
Domain Trusted Cutoff60.00
Noise Cutoff50.00
Domain Noise Cutoff50.00
Isology Typesubfamily_domain
HMM Length161
AuthorHaft DH
Entry DateSep 9 2014 1:10PM
Last ModifiedSep 16 2014 4:02PM
CommentMembers of this family are outer membrane beta-barrel proteins, as inferred by distant homologies to other families (e.g. PF13505) and by the concentration of aromatic residues, especially Phe, in the OMP signal region, which is flush with the C-terminus in some members, but followed by a few residues in others. Members have variable insertions and deletions, affecting scores, so this HMM does not cleanly separate all members from all non-members. Members are common in the Myxococcales, with five occurring in Myxococcus xanthus DK 1622.