| Accession | TIGR04415 |
| Name | O_hepto_targRPT |
| Function | autotransporter passenger strand-loop-strand repeat |
| Trusted Cutoff | 30.00 |
| Domain Trusted Cutoff | 20.00 |
| Noise Cutoff | 20.00 |
| Domain Noise Cutoff | 16.00 |
| Isology Type | repeat |
| HMM Length | 38 |
| Author | Haft DH |
| Entry Date | Feb 11 2013 3:59PM |
| Last Modified | Feb 11 2013 3:59PM |
| Comment | This model describes two tandem copies of a strand-loop-strand repeat that occurs often in type V secretion system (T5SS). These repeats usually occur in the passenger domain of the classical monomeric autotransporter. Proteins with this repeat often are encoded next to a member of family TIGR04414, the Aah/TibC family O-heptosyltransferase, and may be glycosylated in regions with this repeat. |
| References | RN [1]
RM PMID:11953358
RT Functional substitution of the TibC protein of enterotoxigenic Escherichia coli strains for the autotransporter adhesin heptosyltransferase of the AIDA system.
RA Moormann C, Benz I, Schmidt MA
RL Infect Immun. 2002 May;70(5):2264-70.
RN [2]
RM PMID:22221153
RT N for AsN - O for strOcture? A strand-loop-strand motif for prokaryotic O-glycosylation.
RA Otzen D
RL Mol Microbiol. 2012 Mar;83(5):879-83. |
| Genome Property | GenProp1080: protein O-heptosyltransferase with autotransporter target (HMM-CLUST) |
