HMM Summary Page: TIGR04312

Functionchoice-of-anchor B domain
Trusted Cutoff100.00
Domain Trusted Cutoff100.00
Noise Cutoff90.00
Domain Noise Cutoff90.00
Isology Typesubfamily_domain
HMM Length364
AuthorHaft DH
Entry DateApr 11 2012 4:52PM
Last ModifiedApr 11 2012 4:53PM
CommentThis domain, about 385 amino acids long, can have either of at least two types of C-terminal sorting signal. Members from Shewanella and allies have the rhombosortase target domain GlyGly-CTERM (TIGR03501), while members of the Bacteroidetes have the Por secretion system C-terminal domain (TIGR04183). Most other members lack any C-terminal extension, but in most of those, the normal signal sequence is replaced by a lipoprotein signal sequence. Member sequences show a region of local similarity to the LVIVD repeat sequence (PF08309).