| Accession | TIGR04248 |
| Name | SCM_PqqD_rel |
| Function | SynChlorMet cassette protein ScmD |
| Gene Symbol | scmD |
| Trusted Cutoff | 100.00 |
| Domain Trusted Cutoff | 100.00 |
| Noise Cutoff | 80.00 |
| Domain Noise Cutoff | 80.00 |
| Isology Type | equivalog |
| HMM Length | 84 |
| Author | Haft DH |
| Entry Date | Dec 22 2011 8:46AM |
| Last Modified | Feb 10 2012 10:37AM |
| Comment | A biosynthesis cassette found in Syntrophobacter fumaroxidans MPOB, Chlorobium limicola DSM 245, Methanocella paludicola SANAE, and delta proteobacterium NaphS2 contains two PqqE-like radical SAM/SPASM domain proteins, a PqqD homolog, and a conserved hypothetical protein. These components suggest modification of a ribosomally produced peptide precursor, but the precursor has not been identified. Members of this family are the PqqD-like protein. |
| References | RN [1]
RM PMID:20737074
RT Interaction of PqqE and PqqD in the pyrroloquinoline quinone (PQQ) biosynthetic pathway links PqqD to the radical SAM superfamily.
RA Wecksler SR, Stoll S, Iavarone AT, Imsand EM, Tran H, Britt RD, Klinman JP
RL Chem Commun (Camb). 2010 Oct 7;46(37):7031-3. |
| Genome Property | GenProp1029: radical SAM/SPASM system SynChlorMet (HMM) |
