HMM Summary Page: TIGR04117

FunctionCys-Xaa-Xaa-Xaa repeat radical SAM target protein
Trusted Cutoff50.00
Domain Trusted Cutoff50.00
Noise Cutoff40.00
Domain Noise Cutoff40.00
Isology Typeparalog
HMM Length98
AuthorHaft DH
Entry DateFeb 7 2011 1:46PM
Last ModifiedAug 2 2011 2:33PM
CommentThis model represents a paralogous family, in Syntrophus aciditrophicus SB, of peptides a conserved N-terminal region followed by ten to seventeen direct repeats of the sequence CXXX (see repeats model TIGR04114). The N-terminal region includes a hydrophobic patch that is not shared by most members of family TIGR04114.
ReferencesRN [1] RM PMID:21478363 RT Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification. RA Haft DH, Basu MK RL J Bacteriol. 2011 Jun;193(11):2745-55.
Genome PropertyGenProp0967: radical SAM maturase system, CXXX repeats type (HMM)