HMM Summary Page: TIGR04106

FunctionCRISPR-associated protein GSU0052/csb3, Dpsyc system
Gene Symbolcsb3
Trusted Cutoff125.00
Domain Trusted Cutoff125.00
Noise Cutoff30.00
Domain Noise Cutoff30.00
Isology Typeequivalog
HMM Length282
AuthorHaft DH
Entry DateJan 26 2011 10:13AM
Last ModifiedJul 23 2014 10:43AM
CommentThis HMM describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.
ReferencesRN [1] RM PMID:21756346 RT Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems. RA Makarova KS, Aravind L, Wolf YI, Koonin EV RL Biol Direct. 2011 Jul 14;6:38. doi: 10.1186/1745-6150-6-38.
Genome PropertyGenProp0021: CRISPR region (HMM)
GenProp0469: CRISPR system, Dpsyc subtype (HMM)