HMM Summary Page: TIGR04102

FunctionSWIM/SEC-C metal-binding motif protein, PBPRA1643 family
Trusted Cutoff68.00
Domain Trusted Cutoff68.00
Noise Cutoff55.00
Domain Noise Cutoff55.00
Isology Typehypoth_equivalog
HMM Length108
AuthorHaft DH
Entry DateJan 6 2011 10:35AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family have a SWIM, or SEC-C, domain (see PF02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
ReferencesRN [1] RM PMID:12151216 RT SWIM, a novel Zn-chelating domain present in bacteria, archaea and eukaryotes. RA Makarova KS, Aravind L, Koonin EV RL Trends Biochem Sci. 2002 Aug;27(8):384-6.