HMM Summary Page: TIGR04090

Functionalternate signal-mediated exported protein, CPF_0494 family
Trusted Cutoff60.00
Domain Trusted Cutoff55.00
Noise Cutoff42.00
Domain Noise Cutoff35.00
Isology Typesubfamily
HMM Length241
AuthorHaft DH
Entry DateNov 15 2010 11:10AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this largely Clostridial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (PF12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material. Members include CPF_0494, adjacent to SipW homolog CPF_0493.