HMM Summary Page: TIGR03875
| Accession | TIGR03875 |
| Name | RNA_lig_partner |
| Function | RNA ligase partner, MJ_0950 family |
| Trusted Cutoff | 95.30 |
| Domain Trusted Cutoff | 95.30 |
| Noise Cutoff | 90.65 |
| Domain Noise Cutoff | 90.65 |
| Isology Type | hypoth_equivalog |
| HMM Length | 206 |
| Author | Haft DH |
| Entry Date | Oct 22 2009 9:13AM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown. |
| Genome Property | GenProp0898: RNA ligase/unknown protein pair (HMM) |