HMM Summary Page: TIGR03830
Accession | TIGR03830 |
Name | CxxCG_CxxCG_HTH |
Function | putative zinc finger/helix-turn-helix protein, YgiT family |
Trusted Cutoff | 61.80 |
Domain Trusted Cutoff | 61.80 |
Noise Cutoff | 58.85 |
Domain Noise Cutoff | 58.85 |
Isology Type | subfamily |
HMM Length | 127 |
Author | Haft DH |
Entry Date | Sep 14 2009 2:08PM |
Last Modified | Feb 14 2011 3:27PM |
Comment | This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by PF01381. The predicted function is DNA binding and transcriptional regulation. |
References | RN [1] RM PMID:19636869 RT Assignment of (1)H, (13)C, and (15)N resonances of YgiT, a putative DNA interacting protein from E. coli, containing one HTH and two CxxC motifs. RA Papadopoulos E, Billeter M, Graslund A, Vlamis-Gardikas A RL Biomol NMR Assign. 2007 Dec;1(2):217-9. |