| Accession | TIGR03716 |
| Name | R_switched_YkoY |
| Function | integral membrane protein, YkoY family |
| Trusted Cutoff | 138.50 |
| Domain Trusted Cutoff | 138.50 |
| Noise Cutoff | 123.65 |
| Domain Noise Cutoff | 123.65 |
| Isology Type | subfamily |
| HMM Length | 220 |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0008150: biological_process biological_process |
| | GO:0016021: integral to membrane cellular_component |
| Author | Haft DH |
| Entry Date | Mar 2 2009 11:15AM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (PF03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed. |
| References | RN [1]
RM PMID:15096624
RT New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
RA Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR
RL Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6421-6. |
