HMM Summary Page: TIGR03486

FunctionCRISPR-associated protein Cas8a1/Csx13, MYXAN subtype, C-terminal region
Gene Symbolcas8a1
Trusted Cutoff47.40
Domain Trusted Cutoff47.40
Noise Cutoff29.65
Domain Noise Cutoff29.65
Isology Typehypoth_equivalog_domain
HMM Length152
AuthorHaft DH
Entry DateOct 4 2007 10:09AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the C-terminal region or downstream gene; the N-terminal region is modeled by TIGR03485. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.
Genome PropertyGenProp0922: CRISPR system, Myxan subtype (HMM)
GenProp0021: CRISPR region (HMM)