HMM Summary Page: TIGR03357

Functiontype VI secretion system lysozyme-like protein
Trusted Cutoff53.20
Domain Trusted Cutoff53.20
Noise Cutoff50.60
Domain Noise Cutoff50.60
Isology Typehypoth_equivalog
HMM Length133
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0033103: protein secretion by the type VI secretion system biological_process
AuthorHaft DH
Entry DateMar 16 2007 11:25AM
Last ModifiedDec 8 2011 12:26PM
CommentThe description for PFAM family PF04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from PF04965, where all members are associated with bacterial type VI secretion system genomic contexts.
ReferencesDR PFAM; PF04965; GPW / gp25 family RN [1] RM PMID: 16763151 RT A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. RA Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordonez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ RL Science. 2006 Jun 9;312(5779):1526-30.
Genome PropertyGenProp0735: type VI secretion (HMM)