HMM Summary Page: TIGR03350

Functiontype VI secretion system peptidoglycan-associated domain
Trusted Cutoff139.80
Domain Trusted Cutoff139.80
Noise Cutoff133.80
Domain Noise Cutoff133.80
Isology Typeequivalog_domain
HMM Length137
Mainrole CategoryProtein fate
Subrole CategoryProtein and peptide secretion and trafficking
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0033103: protein secretion by the type VI secretion system biological_process
GO:0033104: type VI protein secretion system complex cellular_component
AuthorHaft DH
Entry DateMar 15 2007 10:44AM
Last ModifiedFeb 14 2011 3:27PM
CommentThe flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
ReferencesRN [1] RM PMID: 16763151 RT A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus. RA Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordonez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ RL Science. 2006 Jun 9;312(5779):1526-30.
Genome PropertyGenProp0735: type VI secretion (HMM)