HMM Summary Page: TIGR03278
| Accession | TIGR03278 |
| Name | methan_mark_10 |
| Function | methanogenesis marker radical SAM protein |
| Trusted Cutoff | 350.00 |
| Domain Trusted Cutoff | 350.00 |
| Noise Cutoff | 250.00 |
| Domain Noise Cutoff | 250.00 |
| Isology Type | equivalog |
| HMM Length | 404 |
| Author | Haft DH |
| Entry Date | Jan 19 2007 2:13PM |
| Last Modified | Feb 10 2012 11:29AM |
| Comment | Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. It is a radical SAM enzyme by homology. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon. |
| References | RN [1] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434. |
| Genome Property | GenProp0722: methanogenesis marker set (HMM) |