HMM Summary Page: TIGR03268

Functionputative methanogenesis marker protein 3
Trusted Cutoff234.45
Domain Trusted Cutoff234.45
Noise Cutoff231.80
Domain Noise Cutoff231.80
Isology Typehypoth_equivalog
HMM Length503
Mainrole CategoryEnergy metabolism
Subrole CategoryMethanogenesis
AuthorHaft DH
Entry DateJan 17 2007 10:30AM
Last ModifiedFeb 10 2012 11:36AM
CommentA single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
ReferencesRN [1] RM PMID:22070167 RT ProPhylo: partial phylogenetic profiling to guide protein family construction and assignment of biological process. RA Basu MK, Selengut JD, Haft DH RL BMC Bioinformatics. 2011 Nov 9;12:434. DR HAMAP; MF_01089; 5 of 5
Genome PropertyGenProp0722: methanogenesis marker set (HMM)