| Accession | TIGR03266 |
| Name | methan_mark_1 |
| Function | putative methanogenesis marker protein 1 |
| Trusted Cutoff | 365.00 |
| Domain Trusted Cutoff | 365.00 |
| Noise Cutoff | 265.00 |
| Domain Noise Cutoff | 265.00 |
| Isology Type | hypoth_equivalog |
| HMM Length | 376 |
| Author | Haft DH |
| Entry Date | Jan 16 2007 4:43PM |
| Last Modified | May 9 2011 8:01PM |
| Comment | Members of this protein family represent a distinct clade among the larger set of proteins that belong to families TIGR00702 and PF02624. Proteins from this clade are found in genome sequence if and only if the species sequenced is one of the methanogens. All methanogens belong to the archaea; some but not all of those sequenced are hyperthermophiles. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). |
| References | RN [1]
RM PMID: 16930487
RT Exopolysaccharide-associated protein sorting in environmental organisms: the PEP-CTERM/EpsH system. Application of a novel phylogenetic profiling heuristic.
RA Haft DH, Paulsen IT, Ward N, Selengut JD
RL BMC Biol. 2006 Aug 24;4:29. |
| Genome Property | GenProp0722: methanogenesis marker set (HMM) |
