HMM Summary Page: TIGR02909

Functionuncharacterized protein, YkwD family
Trusted Cutoff171.00
Domain Trusted Cutoff171.00
Noise Cutoff143.80
Domain Noise Cutoff143.80
Isology Typesubfamily_domain
HMM Length127
AuthorHaft DH
Entry DateMar 23 2006 11:02AM
Last ModifiedFeb 14 2011 3:27PM
CommentMembers of this protein family represent a subset of those belonging to Pfam family PF00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.
ReferencesDR PFAM; PF00188; SCP; SCP-like extracellular protein DR PFAM; PF01476; LysM; LysM domain