HMM Summary Page: TIGR02674

FunctionCRISPR-associated RAMP protein, Csx10 family
Gene Symbolcsx10
Trusted Cutoff177.30
Domain Trusted Cutoff177.30
Noise Cutoff74.55
Domain Noise Cutoff74.55
Isology Typehypoth_equivalog
HMM Length402
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateOct 10 2005 5:32PM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR is a widespread repeat family in prokaryotes. At least 45 different protein families occur in prokaryotes only when these repeats are present. This family, a minor CRISPR-associated protein family, seems largely restricted to the Cyanobacteria. It belongs to the RAMP superfamily ( PF03787).
ReferencesDR URL DR PFAM; PF03787; CRISPR-associated RAMP protein RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0021: CRISPR region (HMM)