| Accession | TIGR02580 |
| Name | cas_RAMP_Cmr4 |
| Function | CRISPR type III-B/RAMP module RAMP protein Cmr4 |
| Gene Symbol | cmr4 |
| Trusted Cutoff | 87.00 |
| Domain Trusted Cutoff | 87.00 |
| Noise Cutoff | 65.40 |
| Domain Noise Cutoff | 65.40 |
| Isology Type | equivalog |
| HMM Length | 283 |
| Mainrole Category | Mobile and extrachromosomal element functions |
| Subrole Category | Other |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0043571: maintenance of CRISPR repeat elements biological_process |
| Author | Haft DH |
| Entry Date | May 10 2005 2:12PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (PF03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module. |
| References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57303
DR PFAM; PF03787; RAMP superfamily
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005
RN [2]
RM 11788711
RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.
RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96. |
| Genome Property | GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM) |
| | GenProp0021: CRISPR region (HMM) |
