HMM Summary Page: TIGR02580

FunctionCRISPR type III-B/RAMP module RAMP protein Cmr4
Gene Symbolcmr4
Trusted Cutoff87.00
Domain Trusted Cutoff87.00
Noise Cutoff65.40
Domain Noise Cutoff65.40
Isology Typeequivalog
HMM Length283
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 10 2005 2:12PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (PF03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.
ReferencesDR URL DR URL DR PFAM; PF03787; RAMP superfamily RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005 RN [2] RM 11788711 RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV. RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96.
Genome PropertyGenProp0316: CRISPR system, III-B/RAMP module subtype (HMM)
GenProp0021: CRISPR region (HMM)