HMM Summary Page: TIGR02578

FunctionCRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE
Gene Symbolcas10
Trusted Cutoff171.65
Domain Trusted Cutoff171.65
Noise Cutoff59.20
Domain Noise Cutoff59.20
Isology Typehypoth_equivalog
HMM Length650
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateMay 9 2005 12:36PM
Last ModifiedFeb 14 2011 3:27PM
CommentThe family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
ReferencesDR URL DR URL RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0318: CRISPR system, III-A/Mtube subtype (HMM)
GenProp0021: CRISPR region (HMM)