HMM Summary Page: TIGR02393
| Accession | TIGR02393 |
| Name | RpoD_Cterm |
| Function | RNA polymerase sigma factor RpoD |
| Gene Symbol | rpoD |
| Trusted Cutoff | 354.00 |
| Domain Trusted Cutoff | 354.00 |
| Noise Cutoff | 343.70 |
| Domain Noise Cutoff | 343.70 |
| Isology Type | equivalog_domain |
| HMM Length | 238 |
| Mainrole Category | Transcription |
| Subrole Category | Transcription factors |
| Gene Ontology Term | GO:0006352: transcription initiation, DNA-dependent biological_process |
| GO:0016987: sigma factor activity molecular_function | |
| Author | Haft DH |
| Entry Date | Dec 6 2004 4:46PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. |