HMM Summary Page: TIGR02386

FunctionDNA-directed RNA polymerase, beta' subunit
Gene SymbolrpoC
Trusted Cutoff963.50
Domain Trusted Cutoff963.50
Noise Cutoff919.30
Domain Noise Cutoff919.30
Isology Typeequivalog
EC Number2.7.7.6
HMM Length1147
Mainrole CategoryTranscription
Subrole CategoryDNA-dependent RNA polymerase
Gene Ontology TermGO:0000345: cytosolic DNA-directed RNA polymerase complex cellular_component
GO:0003899: DNA-directed RNA polymerase activity molecular_function
GO:0006350: transcription biological_process
AuthorHaft DH
Entry DateDec 1 2004 11:55AM
Last ModifiedFeb 14 2011 3:27PM
CommentBacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain.
References DR HAMAP; MF_01322; 548 of 579
Genome PropertyGenProp0262: RNA polymerase, bacterial (HMM)
GenProp0262: RNA polymerase, bacterial (HMM)
GenProp0799: bacterial core gene set, exactly 1 per genome (HMM)