HMM Summary Page: TIGR02192

Functionprotein YibB
Trusted Cutoff264.90
Domain Trusted Cutoff264.90
Noise Cutoff109.05
Domain Noise Cutoff109.05
Isology Typehypoth_equivalog
HMM Length270
Mainrole CategoryHypothetical proteins
Subrole CategoryConserved
AuthorHaft DH
Entry DateMay 14 2004 3:58PM
Last ModifiedDec 19 2011 9:54AM
CommentThe protein from this rare, uncharacterized protein family is designated HtrL or YibB in E. coli, where its gene is found in a region of LPS core biosynthesis genes. Homologs are found in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis elegans only. The htrL gene may represent an insertion to the LPS core biosynthesis region, rather than an LPS biosynthetic protein.
ReferencesRN [1] RM PMID:8157607 RT Molecular analysis of the rfaD gene, for heptose synthesis, and the rfaF gene, for heptose transfer, in lipopolysaccharide synthesis in Salmonella typhimurium. RA Sirisena DM, MacLachlan PR, Liu SL, Hessel A, Sanderson KE. RL J Bacteriol. 1994 Apr;176(8):2379-85.