HMM Summary Page: TIGR01985

Trusted Cutoff99.70
Domain Trusted Cutoff99.70
Noise Cutoff76.65
Domain Noise Cutoff76.65
Isology Typeequivalog
HMM Length123
AuthorSelengut J
Entry DateSep 15 2003 3:41PM
Last ModifiedFeb 14 2011 3:27PM
CommentThis HMM represents a family of granule-associate proteins (phasins) which are part of the polyhydroxyalkanoate synthesis machinery. This family is based on a pair of characterized genes from Methylobacterium extorquens. Members of the seed for this model all contain the rest of the components believed to be essential for this system (see the "polyhydroxyalkanoic acid synthesis" property in the GenPropDB). Members of this family score below trusted to another phasin model, TIGR01841 and together may represent a subfamily or broader equivalog.
ReferencesCC RN [1] RM PMID: 12399487 RT Poly-beta-hydroxybutyrate biosynthesis in the facultative methylotroph methylobacterium extorquens AM1: identification and mutation of gap11, gap20, and phaR. RA Korotkova N, Chistoserdova L, Lidstrom ME. RL J Bacteriol. 2002 Nov;184(22):6174-81.
Genome PropertyGenProp0055: polyhydroxyalkanoic acids (HMM)