HMM Summary Page: TIGR01895

FunctionCRISPR-associated protein Cas5, subtype I-B/TNEAP
Gene Symbolcas5b
Trusted Cutoff96.70
Domain Trusted Cutoff96.70
Noise Cutoff86.45
Domain Noise Cutoff86.45
Isology Typeexception
HMM Length217
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 29 2003 5:03PM
Last ModifiedFeb 14 2011 3:27PM
CommentCRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).
ReferencesDR URL DR URL RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0317: CRISPR system, I-B subtype, Tneap branch (HMM)
GenProp0021: CRISPR region (HMM)