| Accession | TIGR01894 |
| Name | cas_TM1795_cmr1 |
| Function | CRISPR type III-B/RAMP module RAMP protein Cmr1 |
| Gene Symbol | cmr1 |
| Trusted Cutoff | 28.65 |
| Domain Trusted Cutoff | 28.65 |
| Noise Cutoff | 19.30 |
| Domain Noise Cutoff | 19.30 |
| Isology Type | hypoth_equivalog_domain |
| HMM Length | 167 |
| Mainrole Category | Mobile and extrachromosomal element functions |
| Subrole Category | Other |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0043571: maintenance of CRISPR repeat elements biological_process |
| Author | Haft DH |
| Entry Date | Apr 29 2003 4:45PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This HMM represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module. |
| References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57303
DR PFAM; PF03787; RAMP superfamily
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005
RN [2]
RM 11788711
RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.
RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96. |
| Genome Property | GenProp0316: CRISPR system, III-B/RAMP module subtype (HMM) |
| | GenProp0021: CRISPR region (HMM) |
