| Accession | TIGR01876 |
| Name | cas_Cas5d |
| Function | CRISPR-associated protein Cas5, subtype I-C/DVULG |
| Gene Symbol | cas5c |
| Trusted Cutoff | 85.00 |
| Domain Trusted Cutoff | 85.00 |
| Noise Cutoff | 65.00 |
| Domain Noise Cutoff | 65.00 |
| Isology Type | exception |
| HMM Length | 203 |
| Mainrole Category | Mobile and extrachromosomal element functions |
| Subrole Category | Other |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0005575: cellular_component cellular_component |
| | GO:0043571: maintenance of CRISPR repeat elements biological_process |
| Author | Haft DH, Sunshine J |
| Entry Date | Apr 11 2003 5:47PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus. |
| References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57300
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005 |
| Genome Property | GenProp0313: CRISPR system, I-C/Dvulg subtype (HMM) |
| | GenProp0021: CRISPR region (HMM) |
