| Accession | TIGR01874 |
| Name | cas_cas5a |
| Function | CRISPR-associated protein Cas5, subtype I-A/APERN |
| Gene Symbol | cas5a |
| Trusted Cutoff | 23.05 |
| Domain Trusted Cutoff | 23.05 |
| Noise Cutoff | 21.70 |
| Domain Noise Cutoff | 21.70 |
| Isology Type | exception |
| HMM Length | 173 |
| Mainrole Category | Mobile and extrachromosomal element functions |
| Subrole Category | Other |
| Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| | GO:0043571: maintenance of CRISPR repeat elements biological_process |
| Author | Haft DH |
| Entry Date | Apr 10 2003 2:51PM |
| Last Modified | Feb 14 2011 3:27PM |
| Comment | This HMM represents a minor family of CRISPR-associated (Cas) protein. These proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This family belongs to a set of several Cas proteins, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. The family is designated Cas5a, for CRISPR-associated protein Cas5, Apern subtype. |
| References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57306
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005
RN [2]
RM 11788711
RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.
RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96 |
| Genome Property | GenProp0319: CRISPR system, I-A/Apern subtype (HMM) |
| | GenProp0021: CRISPR region (HMM) |
