HMM Summary Page: TIGR01870

FunctionCRISPR type III-A/MTUBE-associated protein Csm2
Gene Symbolcsm2
Trusted Cutoff30.60
Domain Trusted Cutoff30.60
Noise Cutoff29.25
Domain Noise Cutoff29.25
Isology Typehypoth_equivalog_domain
HMM Length96
Mainrole CategoryMobile and extrachromosomal element functions
Subrole CategoryOther
Gene Ontology TermGO:0003674: molecular_function molecular_function
GO:0043571: maintenance of CRISPR repeat elements biological_process
AuthorHaft DH
Entry DateApr 8 2003 5:21PM
Last ModifiedFeb 14 2011 3:27PM
CommentThese proteins are found adjacent to a characteristic short, palidromic repeat cluster termed CRISPR, a probable mobile DNA element. This HMM represents the C-terminal domain of a minor family of CRISPR-associated protein from the Mtube subtype of CRISPR/Cas locus. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2.
ReferencesDR URL DR URL RN [1] RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE RL PLOS Comput. Biol. 1(6), e60-e69, 2005
Genome PropertyGenProp0318: CRISPR system, III-A/Mtube subtype (HMM)
GenProp0021: CRISPR region (HMM)