Accession | TIGR01865 |
Name | cas_Csn1 |
Function | CRISPR subtype II RNA-guided endonuclease Cas9 |
Gene Symbol | cas9 |
Trusted Cutoff | 149.00 |
Domain Trusted Cutoff | 149.00 |
Noise Cutoff | 133.90 |
Domain Noise Cutoff | 133.90 |
Isology Type | equivalog |
EC Number | 3.1.-.- |
HMM Length | 830 |
Mainrole Category | Mobile and extrachromosomal element functions |
Subrole Category | Other |
Gene Ontology Term | GO:0003674: molecular_function molecular_function |
| GO:0005575: cellular_component cellular_component |
| GO:0043571: maintenance of CRISPR repeat elements biological_process |
Author | Haft DH |
Entry Date | Apr 3 2003 2:05PM |
Last Modified | Jan 29 2014 12:45PM |
Comment | CRISPR loci appear to be mobile elements with a wide host range. This HMM represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only. |
References | DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=2003
DR URL http://www.tigr.org/tigr-scripts/CMR2/genome_property_def.spl?prop=57301
RN [1]
RT A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/cas subtypes exist in prokaryotic genomes
RA Haft DH, Selengut JD, Mongodin EF, Nelsen KE
RL PLOS Comput. Biol. 1(6), e60-e69, 2005
RN [2]
RM 11788711
RT A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
RA Makarova KS, Aravind L, Grishin NV, Rogozin IB, Koonin EV.
RL Nucleic Acids Res. 2002 Jan 15;30(2):482-96. |
Genome Property | GenProp0314: CRISPR system, II/Nmeni subtype (HMM) |
| GenProp0021: CRISPR region (HMM) |